EY680012

Overview
NameEY680012
Unique NameEY680012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.829e-69
Identity = 129/200 (64.50%), Postives = 154/200 (77.00%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGNEPGIDGEEIAPLAKE 601
            FIGRLEEQKG D++AAAIP  ++E+VQI++LGTGKK  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SV+C+ V+P DV  V+ T++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAG+ PGI+G+EIAPLAKE
Sbjct:  405 FIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKE 604          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 6.303e-69
Identity = 129/200 (64.50%), Postives = 151/200 (75.50%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGNEPGIDGEEIAPLAKE 601
            FIGRLEEQKG D++AAAIP  ++E++QI++LGTGKK  E+ L   E  YP+K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE  LL+L VAG EPGI+GEEIAPLAKE
Sbjct:  404 FIGRLEEQKGPDVMAAAIPLLMEEDIQIVLLGTGKKKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKE 603          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.648e-67
Identity = 128/201 (63.68%), Postives = 151/201 (75.12%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGNEPGIDGEEIAPLAKE 601
            FIGRLEEQKG D++ AAIP  +KE +VQII+LGTGKK  EK L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT  + ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V G+EPGI GEEIAPLA E
Sbjct:  398 FIGRLEEQKGPDVMIAAIPEILKEEDVQIILLGTGKKKFEKLLKSMEEKFPGKVRAVVRFNAPLAHQMMAGADLLAVTSRFEPCGLIQLQGMRYGTPCVCASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAVKVVGTPAYQEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLAME 598          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.928e-66
Identity = 127/202 (62.87%), Postives = 150/202 (74.26%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGNEPGIDGEEIAPLAKE 601
            FIGRLEEQKG D++AAAIP  ++  E+VQI++LGTGKK  E+ L   E  +P K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL+L VAG EPG++GEEIAPLAKE
Sbjct:  399 FIGRLEEQKGPDVMAAAIPQLMEMVEDVQIVLLGTGKKKFERMLMSAEEKFPGKVRAVVKFNAALAHHIMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKE 600          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.518e-66
Identity = 126/201 (62.69%), Postives = 149/201 (74.13%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGNEPGIDGEEIAPLAKE 601
            FIGRLEEQKG D++ AAIP  +KE +VQI++LGTGKK  E+ L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V G+EPGI GEEIAPLA E
Sbjct:  410 FIGRLEEQKGPDVMIAAIPEIVKEEDVQIVLLGTGKKKFERLLKSVEEKFPTKVRAVVRFNAPLAHQMMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVVTTLKRAVKVVGTPAYHEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLALE 610          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.859e-34
Identity = 76/177 (42.94%), Postives = 112/177 (63.28%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 526
            FIGRL+ QKG DI+ +AIP  ++ +VQ+++LG+G+K  E  +   E L+ +K R    FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+PIV STGGL DTV++     Q G          P+    +  T++ A+ TY     +   +M+ GM +D SW+  A ++E+
Sbjct:  452 FIGRLDYQKGVDIILSAIPELMQNDVQVVMLGSGEKQYEDWMRHTENLFKDKFRAWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGIGEGTGWTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQ 628          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.279e-33
Identity = 81/180 (45.00%), Postives = 109/180 (60.56%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 535
            FIGRL+ QKG D++A A+P    ++VQ+I+LGTG++ +E  L +LE  + ++ RG   F+I LAH + AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTVE    +    +G      EA   +D         R   T    +   + K GM QDLSW   AK +EE LL
Sbjct:  568 FIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVEHYNPYEESGLGWTFEKAEANRLIDALGHCLNTYRNYRT----SWEGLQKRGMMQDLSWDNAAKLYEEVLL 743          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.242e-32
Identity = 74/177 (41.81%), Postives = 108/177 (61.02%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 526
            FIGRL+ QKG D++  AIP  +++N+Q ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY     +   +MK GM+ D +W   A ++E+
Sbjct:  453 FIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.242e-32
Identity = 74/177 (41.81%), Postives = 108/177 (61.02%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEE 526
            FIGRL+ QKG D++  AIP  +++N+Q ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTV E F  F          A  P+ +  +   +R A++TY     +   +MK GM+ D +W   A ++E+
Sbjct:  453 FIGRLDYQKGIDLIKLAIPDLMRDNIQFVMLGSGDPGFEGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTV-ENFNPFAEKGEQGTGWAFSPLTIEKMLWALRMAISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQ 628          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.766e-32
Identity = 72/177 (40.68%), Postives = 110/177 (62.15%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEE 526
            FIGRL+ QKG D++  A P  + +++Q ++LG+G    E  +  +E  Y +K RG   FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+P+V  TGGL DTVE      + G+ +       P+   ++ + +R A ATY    Q+   +M+ GM ++ SW+  A ++E+
Sbjct:  463 FIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQ 639          
The following BLAST results are available for this feature:
BLAST of EY680012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 361
Match NameE-valueIdentityDescription
SSG1_ORYGL2.829e-6964.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI6.303e-6964.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU2.648e-6763.68Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE2.928e-6662.87Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT8.518e-6662.69Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSY1_SOLTU3.859e-3442.94Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY21_ORYSJ7.279e-3345.00Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
SSY1_ORYSJ1.242e-3241.81Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI1.242e-3241.81Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ARATH2.766e-3240.68Soluble starch synthase, chloroplastic/amyloplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-E03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680012 ID=EY680012; Name=EY680012; organism=Citrus sinensis; type=EST; length=931bp
CTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCTTGCAGCTG
CCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCCTTGGTACT
GGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTACCC
TGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATATGA
TAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGT
GGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGC
TTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCC
AGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTG
GCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCA
AGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGA
AAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCT
GGTAATGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGA
AAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTTATT
TTTGGACCGCAAACATGTTCCTGTAATTTCTCCCCACCCAAGATATTACT
TAAGGAAAAAACATAGGGTGGGCAGTATATGGCACAAGGCCCTTTTTTTC
AAAAATGGTTTGGGATTTGAAAACATTATTGTTTACCTTGGTATAAGGAA
AAAATTAAATTTCTGGTTTTTCAATTTTTTGGTAAAAGGGGCTCCTGAAG
GGGTTGTCCCCCCCCTTCCCCCGAAAAGGAAAAAATTTTCCCTTTGAAAC
AATTTTTTTAAGATTTTTAAAAAAAAAAAAA
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