EY680012

Overview
NameEY680012
Unique NameEY680012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.718e-32
Identity = 75/177 (42.37%), Postives = 109/177 (61.58%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 526
            FIGRL+ QKG D++  AIP  ++E+VQ ++LG+G    E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTVE  F  F          A  P+ V  +   +R A++T+     +   +MK GM +D +W   A+++E+
Sbjct:  459 FIGRLDYQKGIDLIKMAIPELMREDVQFVMLGSGDPIFEGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVET-FNPFGAKGEEGTGWAFSPLTVDKMLWALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQ 634          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.162e-32
Identity = 74/180 (41.11%), Postives = 110/180 (61.11%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 535
            FIGRL+ QKG D++A AIP  +  +VQ+++LGTG+  +E+ L++ E  + +K R    F++ +AH I AG+D +L+PSRFEPCGL QL+AM YGTVP+V   GGL DTV+  F  F            D  +   +   +   L TY    ++   + + GM+QDLSW   A+++EE L+
Sbjct:  571 FIGRLDHQKGVDLIAEAIPWMMSHDVQLVMLGTGRADLEQMLKEFEAQHCDKIRSWVGFSVKMAHRITAGSDILLMPSRFEPCGLNQLYAMSYGTVPVVHGVGGLRDTVQP-FNPFDESGVG---WTFDRAEANKLMAALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEVLV 746          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.162e-32
Identity = 75/176 (42.61%), Postives = 102/176 (57.95%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEE 526
            FIGR+  QKG DI+  A+P+ IK  +  I  GTG+   E ++ +L+  YP K      F+  LAH I AGAD +L+PSR+EPCGL QL AMRYGT+PI   TGGL DTVE+  TGF    +S           +A++  + R +  Y   Q   EM++  M +D SW   +KK+ E
Sbjct:  316 FIGRMVYQKGIDIVVDAMPNLIKNGISFIFEGTGESYYEHKIRELQNSYPSKVFAFIGFDEALAHKIYAGADSLLVPSRYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS----------SSALTHAISRFIEIYNNKQKFLEMIREAMKRDFSWSNSSKKYIE 481          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 1.051e-31
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE--------------MMKNGMAQDLSWKGPAKKWEETLL 535
            FIGRL+ QKG D++A A+P  + ++VQ+++LGTG++ +E+ L Q E  + +K RG   F++  +H I AGAD +L+PSRFEPCGL QL+AM+YGT+P+V + GGL DTV                +  DP + + +  T  RA A+    AL                +    M QDLSW   A+ +EE L+
Sbjct:  586 FIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGRRDLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTV----------------QPFDPFNESGLGWTFSRAEASQLIHALGNCLLTYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLI 761          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.058e-31
Identity = 78/182 (42.86%), Postives = 110/182 (60.44%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT--QALAEMMKNGMAQDLSWKGPAKKWEETLL 535
            FIGRL+ QKG DI+  A+P    ++VQ+++LGTG+  +E+ L + E  + +K RG   F++ LAH I AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTV   + F    +G      EA   +D       +   L TY    ++   +   GMAQDLSW   A+ +E+ L+
Sbjct:  513 FIGRLDHQKGVDIIGDAMPWIAGQDVQVVMLGTGRPDLEEMLRRFESEHNDKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFADTGLGWTFDRAEANRMID------ALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLV 688          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.982e-30
Identity = 70/175 (40.00%), Postives = 109/175 (62.29%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKWE 523
            F+ RL  QKG D+L  A+P  +  +++++ +G+G+ P+E+ L  L+  YP++      F+  L+H++ AGADF L+PSR+EPCGL Q++++RYGTVPIV +TGGLVDTVE G  G  +          +    +A+   +RRALA Y   + L E  + GM +D SW    +++E
Sbjct:  302 FVSRLAWQKGMDLLLEALPAALHADIRVVGVGSGEGPLEEGLLALQSRYPKQVGVHIGFDPGLSHLVEAGADFFLMPSRYEPCGLNQMYSLRYGTVPIVRATGGLVDTVEGGLDGNGI--------LFEAFHKSALLAAIRRALALYADPSRLDEFRRRGMEKDFSWGASGRRYE 468          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.381e-30
Identity = 73/180 (40.56%), Postives = 109/180 (60.56%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 535
            FIGRL+ QKG DI+  A+P    ++VQ+++LG+G++ +E  L++ E  +  K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V + GGL DTV   F  F+        +  +P     +   +   L TY    ++   +   GM+QDLSW   A+ +EE L+
Sbjct:  629 FIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTV-SAFDPFEDTGLGWTFDRAEP---HKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLV 804          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 72/180 (40.00%), Postives = 109/180 (60.56%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGMAQDLSWKGPAKKWEETLL 535
            FIGRL+ QKG DI+  A+P    ++VQ+++LG+G++ +E  L++ E  +  K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V + GGL DT+   F  F+        +  +P     +   +   L TY    ++   +   GM+QDLSW   A+ +EE L+
Sbjct:  629 FIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTM-SAFDPFEDTGLGWTFDRAEP---HKLIEALGHCLETYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLV 804          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 74/183 (40.44%), Postives = 105/183 (57.38%), Query Frame = 2
Query:    2 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV---------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 520
            F+GRL EQKG D++  A+P  + E +Q++ LG G++  +  L+QL   YP +      ++  LAH + AGAD  L+PSRFEPCGL QL+A+RYGTVPI   TGGL DT+         +E  TGF     S           +A+ T ++RALA Y  ++    +   GMAQ+ SW+  AK +
Sbjct:  300 FVGRLVEQKGIDLILGALPKLLAEKIQVVFLGEGEERHQNALQQLASRYPNQIGVSISYDERLAHGVQAGADIFLMPSRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVDATEKNLRQELATGFTFTESS----------PSALLTAIQRALACYAQSRQWRRLALTGMAQNFSWQTSAKAY 472          
BLAST of EY680012 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.862e-29
Identity = 73/174 (41.95%), Postives = 107/174 (61.49%), Query Frame = 2
Query:    5 IGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWE 523
            + RL EQKG D++AAA+P  +  +VQ+++LG+G    E+   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V S GGL DTVE+ F GF  G+     E        A+ T  RRAL  +   +A   +++ GMA+D SW+  A ++E
Sbjct:  299 VTRLAEQKGIDLVAAALPALLARDVQVVLLGSGDPAYEEAFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRSVGGLADTVED-FDGFARGTGFRFAEYTP----QALLTATRRALDVFRDRRAWRGLVERGMAEDNSWERSAARYE 467          
The following BLAST results are available for this feature:
BLAST of EY680012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 361
Match NameE-valueIdentityDescription
SSY1_WHEAT4.718e-3242.37Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
SSG2_PEA6.162e-3241.11Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_THEYD6.162e-3242.61Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
SSY2_SOLTU1.051e-3139.06Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY22_ORYSJ3.058e-3142.86Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_MYXXD1.982e-3040.00Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
SSY23_ORYSI3.381e-3040.56Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
SSY23_ORYSJ7.532e-3040.00Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
GLGA2_NITOC2.192e-2940.44Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA_ANADE2.862e-2941.95Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-E03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680012 ID=EY680012; Name=EY680012; organism=Citrus sinensis; type=EST; length=931bp
CTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCTTGCAGCTG
CCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCCTTGGTACT
GGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTACCC
TGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATATGA
TAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGT
GGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGC
TTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCC
AGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTG
GCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCA
AGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGA
AAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCT
GGTAATGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGA
AAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTTATT
TTTGGACCGCAAACATGTTCCTGTAATTTCTCCCCACCCAAGATATTACT
TAAGGAAAAAACATAGGGTGGGCAGTATATGGCACAAGGCCCTTTTTTTC
AAAAATGGTTTGGGATTTGAAAACATTATTGTTTACCTTGGTATAAGGAA
AAAATTAAATTTCTGGTTTTTCAATTTTTTGGTAAAAGGGGCTCCTGAAG
GGGTTGTCCCCCCCCTTCCCCCGAAAAGGAAAAAATTTTCCCTTTGAAAC
AATTTTTTTAAGATTTTTAAAAAAAAAAAAA
back to top