EY679981

Overview
NameEY679981
Unique NameEY679981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_SYNY3 (Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gltB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14
Identity = 43/118 (36.44%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEYVRTA-TGEVTLQSA*DNN 354
            VVVLG+ GRN AAGM+GG+AYI DE      + N  +V ++++  P     LK LI+ HV  T S+KG A+L +W+  +P F +++P   +   +A  + +    +G+  L +A + N
Sbjct: 1423 VVVLGQTGRNFAAGMSGGVAYIFDETGDFATRCNSAMVGLEKLEDPEEIKDLKELIQNHVNYTDSAKGKAVLADWEASIPKFVKVMPRDYKRVLQAIKKALEAGLSGDDALNAAFEEN 1540          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLTB_ECOLI (Glutamate synthase [NADPH] large chain OS=Escherichia coli (strain K12) GN=gltB PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.022e-13
Identity = 44/105 (41.90%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIA-PVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVPPSEEDTPEACAEYVRTA 315
            V +LGK G N  AGMTGG AY+LDE      +VN E+V+V  V A  + +  L+ LI  HV+ TGS +G  IL  W T+   F  LV P   D         R+A
Sbjct: 1406 VCILGKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLSVDALAIHEEHLRGLITEHVQHTGSQRGEEILANWSTFATKF-ALVKPKSSDVKALLGHRSRSA 1509          
BLAST of EY679981 vs. ExPASy Swiss-Prot
Match: GLSN_MEDSA (Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    4 VVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKVQRVIAPVGQMQLKSLIEAHVEKTGSSKGSAILKEWDTYLPLFWQLVP 264
            VVVLGK GRN AAGM+GG+AY+LD D T   + N E+V + +V      + L+ LI+ H   T S     +L +++  LP F ++ P
Sbjct: 1522 VVVLGKTGRNFAAGMSGGIAYVLDVDGTFQSRCNLELVDLDKVEEEEDIITLRMLIQQHQRHTNSLLAKEVLVDFENLLPKFVKVFP 1608          
The following BLAST results are available for this feature:
BLAST of EY679981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GLTB_SYNY32.093e-1436.44Ferredoxin-dependent glutamate synthase 1 OS=Synec... [more]
GLTB_ECOLI3.022e-1341.90Glutamate synthase [NADPH] large chain OS=Escheric... [more]
GLSN_MEDSA2.829e-1141.38Glutamate synthase [NADH], amyloplastic OS=Medicag... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-B06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679981 ID=EY679981; Name=EY679981; organism=Citrus sinensis; type=EST; length=808bp
TGTGTCGTTGTACTTGGAAAAGTGGGTAGAAATGTTGCTGCTGGAATGAC
TGGAGGTTTGGCATACATTCTCGATGAGGATGATACTCTCATCCCCAAGG
TCAATAAGGAGATAGTGAAGGTCCAGAGGGTGATTGCTCCTGTTGGCCAG
ATGCAGTTGAAGAGCCTTATTGAAGCCCATGTTGAAAAAACTGGCAGCAG
CAAAGGCTCTGCTATTCTCAAGGAATGGGATACGTATCTACCGCTCTTCT
GGCAGCTGGTTCCACCTAGCGAAGAAGACACCCCAGAGGCTTGTGCAGAG
TATGTAAGAACAGCTACTGGGGAGGTGACATTGCAGTCAGCTTAGGACAA
CAATTTGACATTATACGATGGCCTCGAGGCCTGCATGCAAAGCCAGAAAA
TTCCAATCACACCTTGTACAATTCAAACAGAGAGATTGATTTTTGAAATT
GGAATTCTGCATCGATGAGAGGGAGACTCGAAATTTCACCTTGAAAAGCA
GCTTTGAATATTTATTGGCAAAAAAACCATCATATTTGGATTTGATTTGT
TGGTAAGAAAAAATTCCTTTACCTCAATATTACCGCAATTTGTAAAGGGA
ATTGGGGGAAAACGGTAAATGTAAGTTTTAGGTTTTTTCCCATTCTTGGC
CAGGGCAACATAATGGGTTTTTGGTATAAATTTGTAAACCCTTTGGGAGC
CTTTTTTAAAGGGGGGGGCCCCTTGGCATAGATATTTAACCCAATATGAA
TTTTTCCTAAACCCCCAATTTCTTTTGTGAATTCCCACGCCTTTCCAAAC
TTTTGTGT
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