EY679920

Overview
NameEY679920
Unique NameEY679920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.488e-13
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 2
Query:  407 VGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPIL 613
            VG +Y    ED +TG  IH +GWRS YC     AF G A  +    + Q  RW+ G LE+ FS  NP++
Sbjct:  563 VGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI 631          

HSP 2 Score: 38.5058 bits (88), Expect = 2.488e-13
Identity = 28/93 (30.11%), Postives = 42/93 (45.16%), Query Frame = 3
Query:   27 GIQGPFYQGTGTFHRRDVVYGLCLDQIEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISR-SLDEAHRVADCGYEYGSSWGDEV 302
            G+QGP Y GTG   RR  +YG+       Q NI  +    KFGNS   ++S  + L        S ++   ++E   V    ++  + WG  V
Sbjct:  474 GLQGPSYLGTGCMFRRLALYGIDPPH-WRQDNITPES--SKFGNSILLLESVLEALNQDRFATPSPVNDIFVNELEMVVSASFDKETDWGKGV 563          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.232e-13
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 2
Query:  407 VGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPIL 613
            VG +Y    ED +TG  IH +GWRS YC     AF G A  +    + Q  RW+ G LE+ FS  NP++
Sbjct:  563 VGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI 631          

HSP 2 Score: 38.1206 bits (87), Expect = 3.232e-13
Identity = 28/93 (30.11%), Postives = 42/93 (45.16%), Query Frame = 3
Query:   27 GIQGPFYQGTGTFHRRDVVYGLCLDQIEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISR-SLDEAHRVADCGYEYGSSWGDEV 302
            G+QGP Y GTG   RR  +YG+       Q NI  +    KFGNS   ++S  + L        S ++   ++E   V    ++  + WG  V
Sbjct:  474 GLQGPSYLGTGCMFRRLALYGIDPPH-WRQDNITPE--ASKFGNSILLLESVLEALNQDRFATPSPVNDIFVNELEMVVSASFDKETDWGKGV 563          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 9.229e-13
Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 2
Query:  407 VGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSK 598
            +G  YG  AED +TGL IH +GW S +  P   AFLG A  +    + Q KRW+ G L I  SK
Sbjct:  441 IGVKYGFPAEDIITGLAIHCRGWESAFINPKRAAFLGLAPSTLAQNILQHKRWSEGNLTIFLSK 504          

HSP 2 Score: 36.965 bits (84), Expect = 9.229e-13
Identity = 22/98 (22.45%), Postives = 45/98 (45.92%), Query Frame = 3
Query:   18 GIVGIQGPFYQGTGTFHRRDVVYGLCLDQIEHQGNIVEDELLKKFGNSKEFIKSAAQTLEGKTGGYSSNISRSLDEAHRVADCGYEYGSSWGDEVSIK 311
            G+  + G  Y GTG FHRR+++ G                       SK++ ++  + ++ +      NI+   ++A  +  C YE+ + WG+++ +K
Sbjct:  370 GLDSVGGCLYIGTGCFHRREILCGRIF--------------------SKDYKENWNRGIKERG---KENINEIEEKATSLVTCTYEHRTQWGNDIGVK 444          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.333e-12
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  407 VGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILAT 619
            +G +YG   ED +TG  +H KGWRS YC   PHAF+G A  +    + Q  RW+TG LEI FS+ NP+  +
Sbjct:  626 IGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLFGS 696          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  404 QVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLPFRQCLALFVGSLLGACAQFPSWGTLPLPPYWIIPNSHFPAKGPGTQPICSPLHFFLILKINIPY*KVLFSRVFTIPFLGGG*QIGWG 898
            ++G +YG+  ED LTG  +HS GWRS YC P   AF G A  +    + Q  RWA G +EI  S+  PI     G L + + L+ ++ S++     +P W +LPL  Y  +P             IC     F++ +I+  Y  +LF  +F+   + G  ++ WG
Sbjct:  774 EIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKLAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERLS-YINSVV-----YP-WTSLPLIVYCSLP------------AICLLTGKFIVPEIS-NYASILFMALFSSIAITGILEMQWG 918          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  404 QVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLPFRQCLALFVGSLLGACAQFPSWGTLPLPPYWIIPN 742
            ++G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L F +  A +V + +      P      LP   +  N
Sbjct:  754 EIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLERFA-YVNTTIYPITSIPLLMYCTLPAVCLFTN 865          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  404 QVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLPFRQCLA 655
            ++G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L F +  A
Sbjct:  770 EIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFA 853          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  404 QVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLPFRQCLA 655
            ++G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L F +  A
Sbjct:  762 EIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFA 845          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  404 QVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLPFRQCLA 655
            ++G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L F +  A
Sbjct:  762 EIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFA 845          
BLAST of EY679920 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  404 QVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLPFRQCLALFVGSLLGACAQFPSWGTLPLPPYWIIP 739
            ++G +YG+  ED LTG  +H  GWRS YC+P   AF G A  +    + Q  RWA G +EI FSK  P+     G L F +  + ++ S++     +P W ++PL  Y  +P
Sbjct:  781 EIGWIYGSITEDILTGFKMHCHGWRSIYCIPKRPAFKGSAPLNLSDRLHQVLRWALGSVEIFFSKHCPLWYGYGGGLKFLERFS-YINSIV-----YP-WTSIPLLAYCTLP 885          
The following BLAST results are available for this feature:
BLAST of EY679920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CSLF3_ORYSI2.488e-1342.03Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ3.232e-1342.03Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLE1_ORYSJ9.229e-1345.31Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLF6_ORYSJ5.333e-1246.48Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CESA6_ARATH1.188e-1132.12Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA3_ARATH1.188e-1136.28Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA8_ORYSJ2.027e-1142.86Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA2_ORYSJ2.027e-1142.86Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI2.027e-1142.86Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA6_ORYSJ2.647e-1136.61Probable cellulose synthase A catalytic subunit 6 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-E01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679920 ID=EY679920; Name=EY679920; organism=Citrus sinensis; type=EST; length=916bp
CCCGCGTCCGCGGGAAAGGAATTGTGGGAATTCAAGGACCTTTCTATCAG
GGTACAGGAACTTTTCATAGACGAGATGTTGTATATGGTCTATGCCTCGA
TCAGATTGAACATCAAGGAAATATAGTGGAAGATGAGCTGCTGAAAAAAT
TCGGAAATTCAAAAGAATTCATCAAATCAGCTGCTCAGACTTTGGAAGGG
AAGACAGGAGGTTATTCAAGTAACATATCGAGATCGCTTGATGAAGCACA
CCGAGTTGCAGATTGTGGTTATGAGTATGGTAGTAGCTGGGGTGATGAGG
TTAGTATAAAGAATAAAATTTGCAAAATTTTGTTAAACTTGTTTTTTAGT
CAAAACCTGTACGTTCACCACATATATTGTGGCCGTACGTATATTTGTGA
TTTCAGGTGGGGTGCTTGTATGGCGCCACAGCAGAAGATAACTTAACTGG
CTTGGTGATCCATTCAAAAGGCTGGAGATCAGGCTACTGCTTGCCGATCC
CACATGCCTTTCTTGGCTGTGCGTCTCCCAGCGGCCCTGCTGGGATGAGA
CAACAGAAAAGGTGGGCCACGGGACTGCTTGAAATCCTATTCAGCAAACG
TAACCCCATATTGGCTACTCTCATCGGGAAGCTCCCATTTCGACAATGTT
TGGCTTTATTTGTGGGATCCTTACTTGGGGCTTGCGCTCAATTCCCGAGC
TGGGGCACATTGCCCCTTCCGCCTTATTGGATCATCCCCAACTCCCATTT
TCCGGCAAAAGGTCCAGGAACCCAACCGATTTGTTCCCCCTTGCACTTTT
TTTTGATCCTAAAAATTAATATACCCTATTAAAAGGTACTTTTCAGCCGG
GTTTTTACCATCCCGTTTCTGGGGGGGGGTTAACAAATTGGTTGGGGCCC
AAAATTGTTCCCACAA
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