EY679900
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_STRR6 (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15 Identity = 34/94 (36.17%), Postives = 66/94 (70.21%), Query Frame = 3 Query: 378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659 ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+++G+KFSTY +WIR++I++ +A AR I+IP I+K+ + +++ Sbjct: 132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRN 225
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_STRPN (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15 Identity = 34/94 (36.17%), Postives = 66/94 (70.21%), Query Frame = 3 Query: 378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659 ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+++G+KFSTY +WIR++I++ +A AR I+IP I+K+ + +++ Sbjct: 132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRN 225
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_STRMU (RNA polymerase sigma factor rpoD OS=Streptococcus mutans GN=rpoD PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15 Identity = 34/94 (36.17%), Postives = 66/94 (70.21%), Query Frame = 3 Query: 378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659 ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+++G+KFSTY +WIR++I++ +A AR I+IP I+K+ + +++ Sbjct: 134 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRN 227
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_BACSU (RNA polymerase sigma factor rpoD OS=Bacillus subtilis GN=sigA PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15 Identity = 36/93 (38.71%), Postives = 63/93 (67.74%), Query Frame = 3 Query: 378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656 + L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++ +A AR I+IP I+K+ + ++ Sbjct: 135 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQR 227
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_ENTFA (RNA polymerase sigma factor rpoD OS=Enterococcus faecalis GN=rpoD PE=3 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 5.512e-15 Identity = 35/93 (37.63%), Postives = 64/93 (68.82%), Query Frame = 3 Query: 378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656 ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A AR I+IP I+K+ + ++ Sbjct: 132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQR 224
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_BACHD (RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 9.402e-15 Identity = 35/93 (37.63%), Postives = 63/93 (67.74%), Query Frame = 3 Query: 378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656 + L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A AR I+IP I+K+ + ++ Sbjct: 136 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQR 228
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: HRDD_STRVF (RNA polymerase principal sigma factor hrdD OS=Streptomyces viridifaciens GN=hrdD PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.402e-15 Identity = 34/97 (35.05%), Postives = 64/97 (65.98%), Query Frame = 3 Query: 366 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656 G ++ I+S LV+ +AR Y G+P DL+Q GN G+++ E+FD+ +G+KFSTY +WIR++I++ +A +R I++P ++ +I++ ++ Sbjct: 93 GERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQR 189
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_LISMO (RNA polymerase sigma factor rpoD OS=Listeria monocytogenes GN=rpoD PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.228e-14 Identity = 36/91 (39.56%), Postives = 62/91 (68.13%), Query Frame = 3 Query: 387 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659 L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A AR I+IP I+K+ + ++S Sbjct: 141 LAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRS 231
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_LISIN (RNA polymerase sigma factor rpoD OS=Listeria innocua GN=rpoD PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.228e-14 Identity = 36/91 (39.56%), Postives = 62/91 (68.13%), Query Frame = 3 Query: 387 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659 L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A AR I+IP I+K+ + ++S Sbjct: 141 LAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRS 231
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_CLOAB (RNA polymerase sigma factor rpoD OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.228e-14 Identity = 36/88 (40.91%), Postives = 61/88 (69.32%), Query Frame = 3 Query: 378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKI 641 R++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +G+KFSTY +WIR++I++ +A AR I+IP I+K+ Sbjct: 142 RKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 229 The following BLAST results are available for this feature:
BLAST of EY679900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >EY679900 ID=EY679900; Name=EY679900; organism=Citrus sinensis; type=EST; length=964bpback to top |