EY679900

Overview
NameEY679900
Unique NameEY679900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_STRR6 (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15
Identity = 34/94 (36.17%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  ++FD+++G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+ + +++
Sbjct:  132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRN 225          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_STRPN (RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15
Identity = 34/94 (36.17%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  ++FD+++G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+ + +++
Sbjct:  132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRN 225          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_STRMU (RNA polymerase sigma factor rpoD OS=Streptococcus mutans GN=rpoD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15
Identity = 34/94 (36.17%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  ++FD+++G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+ + +++
Sbjct:  134 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRN 227          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_BACSU (RNA polymerase sigma factor rpoD OS=Bacillus subtilis GN=sigA PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.220e-15
Identity = 36/93 (38.71%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD+ +GYKFSTY  +WIR++I++ +A  AR I+IP      I+K+ + ++
Sbjct:  135 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQR 227          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_ENTFA (RNA polymerase sigma factor rpoD OS=Enterococcus faecalis GN=rpoD PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.512e-15
Identity = 35/93 (37.63%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656
            ++ L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD+ +G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+ + ++
Sbjct:  132 KQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQR 224          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_BACHD (RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 9.402e-15
Identity = 35/93 (37.63%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656
            +  L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD+ +G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+ + ++
Sbjct:  136 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQR 228          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: HRDD_STRVF (RNA polymerase principal sigma factor hrdD OS=Streptomyces viridifaciens GN=hrdD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.402e-15
Identity = 34/97 (35.05%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  366 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARK 656
            G   ++  I+S   LV+ +AR Y   G+P  DL+Q GN G+++  E+FD+ +G+KFSTY  +WIR++I++ +A  +R I++P     ++ +I++ ++
Sbjct:   93 GERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQR 189          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_LISMO (RNA polymerase sigma factor rpoD OS=Listeria monocytogenes GN=rpoD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.228e-14
Identity = 36/91 (39.56%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  387 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659
            L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+ + ++S
Sbjct:  141 LAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRS 231          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_LISIN (RNA polymerase sigma factor rpoD OS=Listeria innocua GN=rpoD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.228e-14
Identity = 36/91 (39.56%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  387 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKS 659
            L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+ + ++S
Sbjct:  141 LAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRS 231          
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_CLOAB (RNA polymerase sigma factor rpoD OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.228e-14
Identity = 36/88 (40.91%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  378 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKI 641
            R++L ++   LV+ +A+ Y G G+ F DL+Q GN+G+++  E+FD  +G+KFSTY  +WIR++I++ +A  AR I+IP      I+K+
Sbjct:  142 RKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFKKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 229          
The following BLAST results are available for this feature:
BLAST of EY679900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RPOD_STRR64.220e-1536.17RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_STRPN4.220e-1536.17RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_STRMU4.220e-1536.17RNA polymerase sigma factor rpoD OS=Streptococcus ... [more]
RPOD_BACSU4.220e-1538.71RNA polymerase sigma factor rpoD OS=Bacillus subti... [more]
RPOD_ENTFA5.512e-1537.63RNA polymerase sigma factor rpoD OS=Enterococcus f... [more]
RPOD_BACHD9.402e-1537.63RNA polymerase sigma factor rpoD OS=Bacillus halod... [more]
HRDD_STRVF9.402e-1535.05RNA polymerase principal sigma factor hrdD OS=Stre... [more]
RPOD_LISMO1.228e-1439.56RNA polymerase sigma factor rpoD OS=Listeria monoc... [more]
RPOD_LISIN1.228e-1439.56RNA polymerase sigma factor rpoD OS=Listeria innoc... [more]
RPOD_CLOAB1.228e-1440.91RNA polymerase sigma factor rpoD OS=Clostridium ac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-C05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679900 ID=EY679900; Name=EY679900; organism=Citrus sinensis; type=EST; length=964bp
CTAGGGATTATCACATGGGAAAAATTCTTGTTCCTTCTAAAAGAAAGGGA
AAAAGAAAATTGAAGACAGCAAGGGTATCAGAAGAATCCATTGAAACTTC
TTTGCTGTCTTTGCCTTCAGAAGCCTTGCAAGAAGGCTTAAAGCAGCCCA
CTATCTTTTCAGCAGAAAGAGCATTGAACTCTAGAGGTAGGCGATTGACG
ATTGCCAGAAACGAGGCAGAAATGTCAAAGGGAGTTCAGGTGGTTGCCAA
CCTGGAGAGGATAAAAACAACTCTGGAAAAAGAAAGTGGGAAAGCAGCCA
GCTTGAATTGCTGGGCTCAAGCAGCTGGAGTCAGTGAGAGGGTGCTGAAA
CAGCATCTGGCTTTTGGTTGGTATTGCAGAGAAGAGCTGATAAAGAGTAC
TCGCCCCTTAGTGTTATTCCTTGCGAGAAACTACAGGGGTCTAGGAATAC
CGTTTTCAGACTTGCTCCAGGCTGGAAATGTTGGTGTTCTACAAGGCGCA
GAGAGGTTCGACCACACAAGGGGATACAAATTCTCAACTTATGTCCAGTA
CTGGATAAGGAAGTCAATATCAAAGATGGTGGCAAGGCATGCTAGAAGAA
TCAAAATTCCTTGCAAATTTAACAGGAAAATAAGTAAGATTCAGAAAGCT
CGAAAAAGCCCTGACCAACAGCAATGAGAAAATACCCAAAAGACATTTGA
ATTTGCCAAGTACACGGGGTCTTTCTTTGGGCTGAAATCAAATCAGCCAA
GGGAATGGCTAAAAAATTGGTGGGTTCAATTGGGTTCAAAAAATTTGGGG
AATGGTCTTAAGGGCAAATATTTTGGAATTTTGCCCCCAAATAAAATCAA
GTAAAAAAATCCCCTAAAAAAAATTTGGGAAGGAGGGGCAACCCATGGAA
AAAAAAAAAAGTTTCTTTTCGTATTTTTGGGAAAAATTTTGTGGAATACC
AAGAAAAAAAAGGG
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