EY679900

Overview
NameEY679900
Unique NameEY679900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679900 vs. ExPASy Swiss-Prot
Match: RPOD_SERMA (RNA polymerase sigma factor rpoD (Fragment) OS=Serratia marcescens GN=rpoD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.271e-11
Identity = 29/75 (38.67%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:  447 IPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARRIKIPCKFNRKISKIQKARKSPDQQ 671
            + F DL+Q GN+G+++  ++F++ RGYKFSTY  +WIR++I++ +A  AR I+IP      I+K+ +  +   Q+
Sbjct:    1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 75
The following BLAST results are available for this feature:
BLAST of EY679900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RPOD_SERMA1.271e-1138.67RNA polymerase sigma factor rpoD (Fragment) OS=Ser... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-C05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679900 ID=EY679900; Name=EY679900; organism=Citrus sinensis; type=EST; length=964bp
CTAGGGATTATCACATGGGAAAAATTCTTGTTCCTTCTAAAAGAAAGGGA
AAAAGAAAATTGAAGACAGCAAGGGTATCAGAAGAATCCATTGAAACTTC
TTTGCTGTCTTTGCCTTCAGAAGCCTTGCAAGAAGGCTTAAAGCAGCCCA
CTATCTTTTCAGCAGAAAGAGCATTGAACTCTAGAGGTAGGCGATTGACG
ATTGCCAGAAACGAGGCAGAAATGTCAAAGGGAGTTCAGGTGGTTGCCAA
CCTGGAGAGGATAAAAACAACTCTGGAAAAAGAAAGTGGGAAAGCAGCCA
GCTTGAATTGCTGGGCTCAAGCAGCTGGAGTCAGTGAGAGGGTGCTGAAA
CAGCATCTGGCTTTTGGTTGGTATTGCAGAGAAGAGCTGATAAAGAGTAC
TCGCCCCTTAGTGTTATTCCTTGCGAGAAACTACAGGGGTCTAGGAATAC
CGTTTTCAGACTTGCTCCAGGCTGGAAATGTTGGTGTTCTACAAGGCGCA
GAGAGGTTCGACCACACAAGGGGATACAAATTCTCAACTTATGTCCAGTA
CTGGATAAGGAAGTCAATATCAAAGATGGTGGCAAGGCATGCTAGAAGAA
TCAAAATTCCTTGCAAATTTAACAGGAAAATAAGTAAGATTCAGAAAGCT
CGAAAAAGCCCTGACCAACAGCAATGAGAAAATACCCAAAAGACATTTGA
ATTTGCCAAGTACACGGGGTCTTTCTTTGGGCTGAAATCAAATCAGCCAA
GGGAATGGCTAAAAAATTGGTGGGTTCAATTGGGTTCAAAAAATTTGGGG
AATGGTCTTAAGGGCAAATATTTTGGAATTTTGCCCCCAAATAAAATCAA
GTAAAAAAATCCCCTAAAAAAAATTTGGGAAGGAGGGGCAACCCATGGAA
AAAAAAAAAAGTTTCTTTTCGTATTTTTGGGAAAAATTTTGTGGAATACC
AAGAAAAAAAAGGG
back to top