EY679882

Overview
NameEY679882
Unique NameEY679882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679882 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.641e-19
Identity = 56/165 (33.94%), Postives = 88/165 (53.33%), Query Frame = 3
Query:   87 SLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTL--MENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYV 575
            SL+D+  G +G+         +++ SL + FG S   V S +  ++    PQ    ++L + A  +  C YE +T WG  IGW+Y S TED+ T   +H+RGW S Y  P  PAF G  P    + + Q  RWA G +EILF++  P+   +  +++F +  AY+
Sbjct:  374 SLDDL--GDDGSLSSIATRKYLAEESLTREFGNSKEMVKSVVDALQRKPFPQKNLKDSL-ETAQEMGHCHYEYQTSWGKNIGWLYDSTTEDVNTSIGIHSRGWTSSYIFPDPPAFLGCMPQGGPEVMVQQRRWATGLLEILFNKQSPLIGMFCRKIRFRQSLAYL 535          
BLAST of EY679882 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.003e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 3
Query:   87 SLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTL--MENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYV 575
            S++D+E+    +     K L  ++ +L + FG S   V S +  ++    PQ+ T    L+ A  V  C +E +T WG  IGW+Y S  ED  T   +H+RGW S Y  PK PAF G+ P    + + Q  RWA G +E+LF++  P+   +  +++F +  AY+
Sbjct:  374 SIDDLEDDGSLSSLATRKYL--AEENLAREFGNSNEMVTSVVEALQRKPNPQN-TLANSLEAAQEVGHCHFEYQTSWGKTIGWLYESTAEDANTSIGIHSRGWTSSYISPKPPAFLGAMPPGGPEAMLQQRRWATGLLEVLFNKQSPLIGMFCRKIRFRQSLAYL 535          
BLAST of EY679882 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.980e-18
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  261 KEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 539
            ++A  +++C YE +T+WG++IG  YG   EDI+TG  +H RGW S +  PKR AF G AP  L+  + Q  RW+ G++ I  S++C   +G+G
Sbjct:  421 EKATSLVTCTYEHRTQWGNDIGVKYGFPAEDIITGLAIHCRGWESAFINPKRAAFLGLAPSTLAQNILQHKRWSEGNLTIFLSKYCSFLFGHG 513          
BLAST of EY679882 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  261 KEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 539
            ++A  + +C YE +T+WG+EIG  YG   ED++TG  +H RGW S+Y  P+R AF G AP  L+  + Q  RW+ G+  I  S+H    +G+G
Sbjct:  416 EKAKSLATCTYELRTQWGNEIGVKYGCPVEDVITGLAIHCRGWESVYMEPQRAAFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFGHG 508          
BLAST of EY679882 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  276 VISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 539
            +++C YE  T WG E G  YG   ED+ TG ++  RGWRS+Y  PKR  F G  P +L   L    RW  G ++I  SR+ P   G+G
Sbjct:  433 LVTCTYEHNTIWGIEKGVRYGCPLEDVTTGLQIQCRGWRSVYYNPKRKGFLGMTPTSLGQILVLYKRWTEGFLQISLSRYSPFLLGHG 520          
The following BLAST results are available for this feature:
BLAST of EY679882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH2.641e-1933.94Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB3_ARATH1.003e-1833.33Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLE1_ORYSJ4.980e-1841.94Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE6_ORYSJ7.191e-1741.94Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE2_ORYSJ4.363e-1442.05Cellulose synthase-like protein E2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-A10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679882 ID=EY679882; Name=EY679882; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGGAATTAAAATCGAGTAAAAAGGGCTCCGATAAGAAGAAA
TCCAGCAAGCATGTGGACCCTACTGTGCCCATATTTAGTCTTGAGGACAT
AGAGGAAGGAGTGGAAGGTGCTGGATTTGATGATGAAAAGTCACTACTTA
TGTCACAAATGAGCCTGGAGAAGCGATTTGGTCAATCAGCTGTTTTTGTT
GCTTCTACACTTATGGAGAATGGTGGTGTTCCACAGTCTGCAACACATGA
AACTCTTCTTAAGGAGGCCATTCATGTTATCAGTTGTGGTTACGAGGATA
AAACAGAATGGGGATCTGAGATAGGATGGATTTATGGTTCTGTTACGGAA
GATATTCTTACAGGATTCAAGATGCATGCCCGTGGTTGGCGGTCAATTTA
CTGCATGCCTAAGCGCCCAGCCTTTAAAGGGTCTGCTCCTATTAATCTTT
CAGATCGTCTAAACCAAGTGCTTCGGTGGGCTCTAGGTTCTGTGGAAATT
CTTTTCAGTCGGCACTGTCCTATCTGGTATGGTTATGGTGGTCGATTGAA
ATTTCTTGAGAGGTTTGCTTATGTGAACACCACCTATCTATCCTCTCACT
GCAATTCCTCTTCTCATGTATTGGACGCTGCCGGCTGTCTGGTCTATTAA
CGAACAAAGTTCTTTATGCCTCAAATTAGTACCCTTGCCAGTATAGTGGT
TATTTTCCCTCTTTCTGCCCATCTCCCCCCTGGGAATTCGGGGAATGGAG
GGGGAGTGGGGTTTGGATCCAAAAAAGGGGGGGAAAAACCAAACAGTTTT
GGGGTTTTTGGGGGGGGTTTTCCCCCCCCTCCTATTTGGGGGTTTTTCCG
GGGGTCTTCCCCAAAGAATTTGGGGGGGGGTTTGGACAACCCAAATTTTC
CCTGGTCCCCCCCCCGAGG
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