EY679860

Overview
NameEY679860
Unique NameEY679860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.608e-24
Identity = 68/127 (53.54%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  398 LDYLGNPSLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEG     +G  GE  D LYP            P   FAELKVKEIKNGRLAMFS+ GF F  A   G+G ++ +  H   P          TNFVP K
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWAFATNFVPGK 124          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 84/247 (34.01%), Postives = 112/247 (45.34%), Query Frame = 2
Query:    5 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDP---LYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW 730
            S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E      + R  E  DP    YP            P + F ELK+KEIKNGRLAM + VGF    +  PG G ++ +  H   PW
Sbjct:   11 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAE------QQRTME-KDPEKKKYPGGAFDPLGFSKDPAK-FEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPW 229          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21
Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778
            SL+HAQSILAIWACQVVLMGAVEG      G  GEV DPLYP            P   FAELKVKEIKNGRLAMFS+ GF F  A   G+G ++ +  H   P          TNFVP K
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHIADPV-NNNAWAFATNFVPGK 267          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21
Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778
            SL+HAQSILAIWACQVVLMGAVEG      G  GEV DPLYP            P   FAELKVKEIKNGRLAMFS+ GF F  A   G+G ++ +  H   P          TNFVP K
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHIADPV-NNNAWAFATNFVPGK 267          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21
Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778
            SL+HAQSILAIWACQVVLMGAVEG      G  GEV DPLYP            P   FAELKVKEIKNGRLAMFS+ GF F  A   G+G ++ +  H   P          TNFVP K
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWSYATNFVPGK 116          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21
Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778
            SL+HAQSILAIWACQVVLMGAVEG      G  GEV DPLYP            P   FAELKVKEIKNGRLAMFS+ GF F  A   G+G ++ +  H   P          TNFVP K
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWAFATNFVPGK 265          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21
Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778
            SL+HAQSILAIWACQVVLMGAVEG      G  GEV DPLYP            P   FAELKVKEIKNGRLAMFS+ GF F  A   G+G ++ +  H   P          TNFVP K
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWAFATNFVPGK 265          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.409e-20
Identity = 68/193 (35.23%), Postives = 93/193 (48.19%), Query Frame = 2
Query:  158 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW 730
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE   +  +    +     YP            P + F ELKVKEIKNGRLA+ ++VGF    +   G G ++ +  H   PW
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEK----DSEKKKYPGGAFDPLGYSKDPAK-FEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPW 230          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.840e-20
Identity = 66/207 (31.88%), Postives = 95/207 (45.89%), Query Frame = 2
Query:  164 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLF--------------AELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQP 727
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V              TDP++P            PG L+               EL+ KEIKNGRLAM +++G  F      G G +  +  H   P
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN-------------TDPIFPNNKLTGTDVGY-PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLFAHLADP 258          
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.920e-19
Identity = 73/234 (31.20%), Postives = 103/234 (44.02%), Query Frame = 2
Query:   86 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLF--------------AELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQP 727
            GS+SV+  +     DR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V              TDP++P            PG L+               EL+ KEIKNGRLAM +++G  F      G G +  +  H   P
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN-------------TDPIFPNNKLTGTDVGY-PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of EY679860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_RAPSA1.608e-2453.54Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU5.174e-2334.01Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2F_SOLLC1.274e-2154.17Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.274e-2154.17Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.274e-2154.17Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.274e-2154.17Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.274e-2154.17Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB11_SOLLC1.409e-2035.23Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC1.840e-2031.88Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.920e-1931.20Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-G09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679860 ID=EY679860; Name=EY679860; organism=Citrus sinensis; type=EST; length=927bp
CTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGC
TAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTT
TCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCCC
ATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACT
ACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAG
AACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCT
TGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTG
AGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTT
GACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCAT
CTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTAACNAAATT
GCTGGGAGGGCCGCTTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCCTTTGATCCCTTGGGTTTGGCTGATGACCCGGAAGGCTTTTTGCTGA
GCTCAAGGTTAAAGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCCTTG
TTGGGTTTTCTTTCCATTCGGCCAATTGTCCCGGGCAGGGAACCGTAAAA
AAAATTGGCCAACACTTTGGCCAACCCTGGTAAAAAAAAAGGCCTGGGCC
TACCCACACAAATTTTGTCCCCGAAAAGTGAGCTTCATGTGAAAACTACT
AAAAAGCGGGAAATTGAAAAAAGAAAATACATATGTCTATAATCGGCCAA
CCTCATTCCCAAATCGAGCAACACGTAGGGGATGTATTAAAGGAGAAAGC
CCCGCACCTAGCGTCTTGGGGGGGGGG
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