EY679860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.608e-24 Identity = 68/127 (53.54%), Postives = 76/127 (59.84%), Query Frame = 2 Query: 398 LDYLGNPSLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778 LDYLGNPSL+HAQSILAIWA QV+LMGAVEG +G GE D LYP P FAELKVKEIKNGRLAMFS+ GF F A G+G ++ + H P TNFVP K Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWAFATNFVPGK 124
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23 Identity = 84/247 (34.01%), Postives = 112/247 (45.34%), Query Frame = 2 Query: 5 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDP---LYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW 730 S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP + ++ I A + + + E + R E DP YP P + F ELK+KEIKNGRLAM + VGF + PG G ++ + H PW Sbjct: 11 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAE------QQRTME-KDPEKKKYPGGAFDPLGFSKDPAK-FEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPW 229
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21 Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778 SL+HAQSILAIWACQVVLMGAVEG G GEV DPLYP P FAELKVKEIKNGRLAMFS+ GF F A G+G ++ + H P TNFVP K Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHIADPV-NNNAWAFATNFVPGK 267
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21 Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778 SL+HAQSILAIWACQVVLMGAVEG G GEV DPLYP P FAELKVKEIKNGRLAMFS+ GF F A G+G ++ + H P TNFVP K Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHIADPV-NNNAWAFATNFVPGK 267
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21 Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778 SL+HAQSILAIWACQVVLMGAVEG G GEV DPLYP P FAELKVKEIKNGRLAMFS+ GF F A G+G ++ + H P TNFVP K Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWSYATNFVPGK 116
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21 Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778 SL+HAQSILAIWACQVVLMGAVEG G GEV DPLYP P FAELKVKEIKNGRLAMFS+ GF F A G+G ++ + H P TNFVP K Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWAFATNFVPGK 265
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.274e-21 Identity = 65/120 (54.17%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 419 SLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW*KKRPGPTHTNFVPEK 778 SL+HAQSILAIWACQVVLMGAVEG G GEV DPLYP P FAELKVKEIKNGRLAMFS+ GF F A G+G ++ + H P TNFVP K Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVVDPLYPGGSFDPLGLAEDP-EAFAELKVKEIKNGRLAMFSMFGF-FVQAIVTGKGPLENLADHLADPV-NNNAWAFATNFVPGK 265
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.409e-20 Identity = 68/193 (35.23%), Postives = 93/193 (48.19%), Query Frame = 2 Query: 158 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLFAELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQPW 730 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P + ++ I A + + + VE + + + YP P + F ELKVKEIKNGRLA+ ++VGF + G G ++ + H PW Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEK----DSEKKKYPGGAFDPLGYSKDPAK-FEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPW 230
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.840e-20 Identity = 66/207 (31.88%), Postives = 95/207 (45.89%), Query Frame = 2 Query: 164 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLF--------------AELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQP 727 PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA ++ G V TDP++P PG L+ EL+ KEIKNGRLAM +++G F G G + + H P Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN-------------TDPIFPNNKLTGTDVGY-PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLFAHLADP 258
BLAST of EY679860 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.920e-19 Identity = 73/234 (31.20%), Postives = 103/234 (44.02%), Query Frame = 2 Query: 86 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEG*XNCWEGRFGEVTDPLYPXXXXXXXXXXX*PGRLF--------------AELKVKEIKNGRLAMFSLVGFSFHSANCPGQGTVKKIGQHFGQP 727 GS+SV+ + DR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA ++ G V TDP++P PG L+ EL+ KEIKNGRLAM +++G F G G + + H P Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN-------------TDPIFPNNKLTGTDVGY-PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI-YTGTGPIDNLFAHLADP 258 The following BLAST results are available for this feature:
BLAST of EY679860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >EY679860 ID=EY679860; Name=EY679860; organism=Citrus sinensis; type=EST; length=927bpback to top |