EY679835

Overview
NameEY679835
Unique NameEY679835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679835 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.829e-11
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = 2
Query:   56 CAGVGILGIAWA---FGGMI-----FVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINP 520
            CA   + G + A    GG+I       L++  +G+SG ++NPAVT    L+ +V L+ ++ Y+ AQ LG I+G G++     + Y R   G   LA G +TG     E++ T +L   V   +    +  D  +  +AP  IG A+F+        +G  +NP
Sbjct:   56 CAAFAVAGDSAARALLGGLIQGMALAALIWAVSGVSGCNLNPAVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGCLPNMY-RIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTS--VFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNP 215          
BLAST of EY679835 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 55/170 (32.35%), Postives = 81/170 (47.65%), Query Frame = 2
Query:   62 GVGILG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLG-AISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPSKESRGPLL 547
            G+G+LG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LG A +    ++    +  T  G GA     G      + AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NP++ + GP L
Sbjct:   45 GIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPAR-TFGPYL 208          
BLAST of EY679835 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 56/180 (31.11%), Postives = 82/180 (45.56%), Query Frame = 2
Query:   71 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPSKESRGPLLFTTRGQGLGMINGSFW 595
            +L IA  F       V  +   SG H NPAVT    +   +SL RA+ Y+ AQ  GA +G  L+      Y    GG     G N + +  STG  +A E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NP++ S GP +      G   ++  FW
Sbjct:   52 VLQIAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALL------YGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLAS------PAAMIGTSVALGHLIGIYFTGCSMNPAR-SFGPAVIV----GKFAVHWIFW 214          
The following BLAST results are available for this feature:
BLAST of EY679835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
AQPA_DICDI4.829e-1130.06Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
AQPM_METTH6.306e-1132.35Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
AQP6_MOUSE8.236e-1131.11Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-E07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679835 ID=EY679835; Name=EY679835; organism=Citrus sinensis; type=EST; length=963bp
CTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCG
ACGGCTGTGCCGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTGGC
ATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACAT
TAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGG
TCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGT
GTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGG
TGGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCG
CCGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACT
GATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCT
CCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCA
CTGGCACTGGCATTAACCCCAGCAAGGAGTCCCGGGGCCCGCTGTTATTT
ACAACAAGGGGACAAGGGCTTGGGATGATCAATGGCTCCTTCTGGGGTTG
AACCCTTCATTCGGTGCAGCAATTGCGGCTTTCTACCCACCATTTCTTCT
TTAAGAAAGTGGACCTGTCCGGGGTCTTGGATTCATTCCAGGAGCCCAAC
CCCCCGGGCCTAATTTAACTTCTCGACACTGCGAAAAACCCAACCCCTTC
GGGGGGTTAAGAGATTAAACATTCGGAGAAAAAAAAACTGGAGAAAAAAC
AAAGATTTTCTTTAATTCTTCAAAATCGTAACAAAGGCGCCGGGGGGGGG
GGGTGAATTTAACCACATTAAAAAGAAATTACAACTGACACCAATTTTAC
CTTACAAAGACAACCGAGGCGGAAATTTACTATGTCAGAGGAAACCTCCC
CACACTATAAGAA
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