EY679828

Overview
NameEY679828
Unique NameEY679828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DT++NVK+KIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTI LEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EY679828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_DROME8.034e-2991.30Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR8.034e-2991.30Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK8.034e-2991.30Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA8.034e-2991.30Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO8.034e-2991.30Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA8.034e-2991.30Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR8.034e-2991.30Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN8.034e-2991.30Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACECL8.034e-2989.86Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR1.049e-2891.30Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679828 ID=EY679828; Name=EY679828; organism=Citrus sinensis; type=EST; length=464bp
CCACGCGTCCGGTGGTATGCAGATTTCCCCCCTTGNAACTCACTGGGAAA
ACCATCACATTGGAGGTTCCCATTAAAGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTCCATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAACATC
CAGAAGGAGTCCACTCTGCATCTTGTGCTCCGTCTCCGTGGAGGTTTCTG
AGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGGTTTGTCTTG
GTTAATGTTTGCTTGCTATTGGTGAAATGGCTTACATAACTATTTGAAGT
TTATTTTGGTTGTGGTAGTTGAACTCTGTTTCTAAGATATTGATATGGTC
CCACTAAGGTGGGGGGGGGATATCCAAGAATCTTTTTCTTGACTAGAACG
AAAAGAACGGGGCC
back to top