EY679828

Overview
NameEY679828
Unique NameEY679828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITL+V   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 248
            LTGKTITLEV   D+I+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:    8 LTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGY 77          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVK KIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.370e-28
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.790e-28
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITL+V   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.790e-28
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   DTI+NVK KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.338e-28
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTI LEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.338e-28
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   D+I+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.987e-28
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITLEV   D I+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.802e-28
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTITL+V   D+IDNVK KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of EY679828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_TETPY1.049e-2889.86Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_ENCCU1.049e-2888.57Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_ACACA1.049e-2891.30Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_SHEEP1.370e-2889.86Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_EIMBO1.790e-2889.86Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_AGLNE1.790e-2889.86Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_TRYBB2.338e-2889.86Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU2.338e-2889.86Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_DICDI3.987e-2889.86Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN6.802e-2888.41Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679828 ID=EY679828; Name=EY679828; organism=Citrus sinensis; type=EST; length=464bp
CCACGCGTCCGGTGGTATGCAGATTTCCCCCCTTGNAACTCACTGGGAAA
ACCATCACATTGGAGGTTCCCATTAAAGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTCCATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAACATC
CAGAAGGAGTCCACTCTGCATCTTGTGCTCCGTCTCCGTGGAGGTTTCTG
AGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGGTTTGTCTTG
GTTAATGTTTGCTTGCTATTGGTGAAATGGCTTACATAACTATTTGAAGT
TTATTTTGGTTGTGGTAGTTGAACTCTGTTTCTAAGATATTGATATGGTC
CCACTAAGGTGGGGGGGGGATATCCAAGAATCTTTTTCTTGACTAGAACG
AAAAGAACGGGGCC
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