EY679828

Overview
NameEY679828
Unique NameEY679828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.883e-28
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTI LEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.858e-26
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTG TI LEV   DTI+NVKAKIQDKEGIPPDQQR IFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    8 LTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   51 TITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 239
            TITLEV   DTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.604e-23
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGKTIT+E    DT+  VK KI DKEG+P DQQR I+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    8 LTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.917e-22
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 248
            LTGKTIT E    +T+ ++K KI DKEG+P DQQR IFAGKQLED +T+ADYNIQKESTLH+VLRLRGG+
Sbjct:    8 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGGY 77          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 8.334e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 248
            LTGK I +++   DTID +K ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGGF
Sbjct:    8 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 77          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.422e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 248
            LTGK I +++   DTID VK ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    8 LTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.857e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 248
            LTGK I +++   DTID +K ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    8 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 77          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.136e-17
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGK I +++   DTID +K ++++KEGIPP QQR I+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    8 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 3
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 248
            LTGK I L++   D ++ +K K+++KEGIPP QQR IFAGKQ+ D +T ADY +   S LHLVL LRGGF
Sbjct:    8 LTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGGF 77          
The following BLAST results are available for this feature:
BLAST of EY679828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_LEIMA8.883e-2888.41Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA2.858e-2685.51Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE4.126e-2590.48Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP8.604e-2375.36Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC1.917e-2271.43Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_ARATH8.334e-1860.00NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RUB1_DESAN1.422e-1760.00NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ORYSJ1.857e-1758.57NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB2_ORYSJ4.136e-1759.42NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
NEDD8_CAEEL5.402e-1757.14NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679828 ID=EY679828; Name=EY679828; organism=Citrus sinensis; type=EST; length=464bp
CCACGCGTCCGGTGGTATGCAGATTTCCCCCCTTGNAACTCACTGGGAAA
ACCATCACATTGGAGGTTCCCATTAAAGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTCCATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAACATC
CAGAAGGAGTCCACTCTGCATCTTGTGCTCCGTCTCCGTGGAGGTTTCTG
AGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGGTTTGTCTTG
GTTAATGTTTGCTTGCTATTGGTGAAATGGCTTACATAACTATTTGAAGT
TTATTTTGGTTGTGGTAGTTGAACTCTGTTTCTAAGATATTGATATGGTC
CCACTAAGGTGGGGGGGGGATATCCAAGAATCTTTTTCTTGACTAGAACG
AAAAGAACGGGGCC
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