EY679828

Overview
NameEY679828
Unique NameEY679828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGK I L++   D +  +K ++++KEGIPP QQR I+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    8 LTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
[Close]
BLAST of EY679828 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:   39 LTGKTITLEVPIKDTIDNVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 245
            LTGK I++E+   D + ++K  +++KEGIPP QQR IF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    8 LTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
The following BLAST results are available for this feature:
BLAST of EY679828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBL1_SCHPO5.590e-1449.28Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.798e-1249.28NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679828 ID=EY679828; Name=EY679828; organism=Citrus sinensis; type=EST; length=464bp
CCACGCGTCCGGTGGTATGCAGATTTCCCCCCTTGNAACTCACTGGGAAA
ACCATCACATTGGAGGTTCCCATTAAAGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTCCATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAACATC
CAGAAGGAGTCCACTCTGCATCTTGTGCTCCGTCTCCGTGGAGGTTTCTG
AGTTTGGTCATCTGGGTGTGTGTGTGTCTTATTTGCTTCGGTTTGTCTTG
GTTAATGTTTGCTTGCTATTGGTGAAATGGCTTACATAACTATTTGAAGT
TTATTTTGGTTGTGGTAGTTGAACTCTGTTTCTAAGATATTGATATGGTC
CCACTAAGGTGGGGGGGGGATATCCAAGAATCTTTTTCTTGACTAGAACG
AAAAGAACGGGGCC
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