EY679819 | Citrus Genome Database

Overview


Name	EY679819
Unique Name	EY679819
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1010

Libraries


Library Name	Type
Sweet orange leaf, young greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 202.216 bits (513), Expect = 3.943e-51
Identity = 101/186 (54.30%), Postives = 137/186 (73.66%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            R  RIM+S RDPS+RK G+GNIFIKNL   ID+KAL+DTFS FG+ILS KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V   L ++ER++   +TK  + N++VKN+   TTDE  ++ F ++G I SA + +D DGK K FGFVN+E  +DA KAVEALN  + +  + YVG
Sbjct:  107 RLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVG 292

HSP 2 Score: 119.013 bits (297), Expect = 4.389e-26
Identity = 67/175 (38.29%), Postives = 98/175 (56.00%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK----------TKFN--NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N+++KN++     +   + F+ FG I+S  +  D  G+ KGFGFV +E  E A  A++ LN   +N ++++VG   +K ER  V  K           K+   N+FVKNL +S  DE L++ F  YGTITSA VMR  +GKSK FGFV F   ++A KA+   N +    +  YV
Sbjct:  220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394

HSP 3 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 314
            N+F+KNLD S+D + L + F+ +G I S K+    +G+SKGFGFV F   E A  AI + N  ++  K ++V    RK  R +
Sbjct:  323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS 405

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BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.439e-50
Identity = 92/183 (50.27%), Postives = 131/183 (71.58%), Query Frame = 3

Query:   15 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF++FG+ILSCK+ TD +G+S+GF FV +   E+A  AI  +NGML+NDK+V+VGH + K+ER  +   ++ +F NV++KN+    TD + +     +G   S  + RD  G SK FGFVN+EN + A KAV+ LN K+ + ++ Y G
Sbjct:  118 RIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAG 300

HSP 2 Score: 29.6462 bits (65), Expect = 3.439e-50
Identity = 22/56 (39.29%), Postives = 28/56 (50.00%), Query Frame = 1

Query:  571 KSEREQKLKGQFEQAQEGNCKQISQGLNLYIKNFGXXXXXXXXXXGVIFLNFGTIT 738
            KSERE +LK   E+ +  N +  S G+NLY+KN               F  FGTIT
Sbjct:  305 KSEREAELKKSHEEKRLEN-EAKSAGVNLYVKNLDDEWDDDRLR--AEFEAFGTIT 357

HSP 3 Score: 124.79 bits (312), Expect = 8.000e-28
Identity = 68/175 (38.86%), Postives = 97/175 (55.43%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N++IKN+D  +      D    FG  +S  ++ D  G SKGFGFV +EN ESA+ A+D+LN   +N K+++ G    K ERE    K+               N++VKNL +   D+ L+  F  +GTITS+ VMRD  G S+ FGFV + + D+A KAV  +NGK    +  YV
Sbjct:  228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYV 402

HSP 4 Score: 69.3218 bits (168), Expect = 3.989e-11
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 308
            R   +  SH +  +    KS   N+++KNLD   D   L   F +FG I S K+  D SG S+GFGFV + + + A  A+ ++NG +I  K ++V    RK  R
Sbjct:  308 REAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411

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BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.239e-46
Identity = 101/240 (42.08%), Postives = 147/240 (61.25%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGXXXXXXXXXXXXXXXX*ASPGRKL*TNFPGFEFVYQEFWVKVIDEEKIKGSYFP 719
            RP RIM+S RDP++RK+G GNI+IKNLD +ID+KALHDTFS+FG ILSCKIATD  G S+GFGFV +E+ ESA++AI  +NGML+NDK+VFVG  + K +R       K  F NVF+KNL    T+ + ++   ++G  +S  +  + +GK   FGFV+++  D A KA++ L+  +F   + + G                 AS   KL   + G   +Y +     ID++K++  + P
Sbjct:  115 RPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKL-NKYQGVN-LYIKNLDDTIDDDKLRAEFAP 352

HSP 2 Score: 100.908 bits (250), Expect = 1.237e-20
Identity = 62/181 (34.25%), Postives = 93/181 (51.38%), Query Frame = 3

Query:   48 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN-----NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            +K+   N+FIKNL   I      +  + FG   S  ++T+  G+  GFGFV ++  + A  AID L+       ++F G   +K ER     K        K N     N+++KNL ++  D+ L+  F  +GTITSA VM D  GKSK FGFV + + ++A KAV  +N +    +  YV
Sbjct:  222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYV 402

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BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.550e-44
Identity = 87/186 (46.77%), Postives = 126/186 (67.74%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            + IR+M+S RD  +R+SG GN+FIKNLDKSID+K L++ FS+FG ILS K+ +D  G SKG+ FV F+N+ +A  AI+++NG L+   +VFVG F  +++RE    +  ++F NV++KN      DE LK  F +YG   S  VM D  GKSK FGFV+F++ + A KAVE +NG+  + +  +VG
Sbjct:   79 KSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVG 263

HSP 2 Score: 29.6462 bits (65), Expect = 2.550e-44
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 1

Query:  568 KKSEREQKLKGQFEQAQEGNCKQISQGLNLYIKN 669
            KK ER+ +LK  FEQ +    +   QG+ LYIKN
Sbjct:  267 KKVERQAELKQMFEQLKRERIRG-CQGVKLYIKN 299

HSP 3 Score: 121.324 bits (303), Expect = 8.845e-27
Identity = 63/167 (37.72%), Postives = 102/167 (61.08%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 527
            N++IKN    +D + L D FS +G  LS K+ TD SG+SKGFGFV F++ E+A+ A++++NG  IN + +FVG   +K ER+   +K  F               +++KNL ++  DE L+  F  +G+I+   VM++ +G+SK FG + F + +DA KA+  +NG+
Sbjct:  191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ-AELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGR 355

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.358e-43
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG
Sbjct:   87 KPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 2 Score: 112.079 bits (279), Expect = 5.366e-24
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 527
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAV+ +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = 3

Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNL +S  +  L   F  +G I S  V+ D +G SK + +V+F++   A +A+  +NG + ++R+ YVG
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.358e-43
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG
Sbjct:   87 KPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 2 Score: 112.079 bits (279), Expect = 5.366e-24
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 527
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAV+ +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = 3

Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNL +S  +  L   F  +G I S  V+ D +G SK + +V+F++   A +A+  +NG + ++R+ YVG
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.358e-43
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG
Sbjct:   87 KPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 2 Score: 112.464 bits (280), Expect = 4.108e-24
Identity = 65/175 (37.14%), Postives = 102/175 (58.29%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 554
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAV+ +NG+    +  +V
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373

HSP 3 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = 3

Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNL +S  +  L   F  +G I S  V+ D +G SK + +V+F++   A +A+  +NG + ++R+ YVG
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.358e-43
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG
Sbjct:   87 KPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 2 Score: 112.079 bits (279), Expect = 5.366e-24
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 527
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAV+ +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = 3

Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNL +S  +  L   F  +G I S  V+ D +G SK + +V+F++   A +A+  +NG + ++R+ YVG
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.358e-43
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG
Sbjct:   87 KPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 2 Score: 112.079 bits (279), Expect = 5.366e-24
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 527
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAV+ +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = 3

Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNL +S  +  L   F  +G I S  V+ D +G SK + +V+F++   A +A+  +NG + ++R+ YVG
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178

[Close]

BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.358e-43
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 3

Query:    6 RPIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +P R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK+ F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG
Sbjct:   87 KPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272

HSP 2 Score: 112.079 bits (279), Expect = 5.366e-24
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 3

Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 527
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNL E+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAV+ +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = 3

Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG 557
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNL +S  +  L   F  +G I S  V+ D +G SK + +V+F++   A +A+  +NG + ++R+ YVG
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178

The following BLAST results are available for this feature:

BLAST of EY679819 vs. ExPASy Swiss-Prot

BLAST of EY679819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
PABP_YEAST	3.943e-51	54.30	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_CRYNE	3.439e-50	50.27	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_YARLI	2.239e-46	42.08	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAB4L_HUMAN	2.550e-44	46.77	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]
PABP5_PONPY	1.358e-43	50.00	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	1.358e-43	50.00	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	1.358e-43	50.00	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	1.358e-43	50.00	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	1.358e-43	50.00	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]
PABP5_GORGO	1.358e-43	50.00	Polyadenylate-binding protein 5 OS=Gorilla gorilla...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-650-004-D03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679819 ID=EY679819; Name=EY679819; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGATTAGAATCATGTATTCCCATCGGGATCCTAGTATTCGG
AAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGA
TCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTT
GTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTG
CAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGG
CATGCTTATTAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGC
AGGAAAGAGAAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTC
AAAAACCTTGCTGAGTCAACTACAGATGAAGATTTGAAGAAATTTTTTGG
TGAGTATGGAACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAA
AATCCAAGTGTTTTGGATTTGTGAATTTTGAAAATGCAGATGATGCTGCC
AAAGCTGTTGAAGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGGTA
TGTTGGAAAAGCTCATAAAAAAATCTGAAAGAGAACAAAAGCTTAAAGGG
CAATTTGAGCAAGCCCAGGAAGGAAACTGTAAACAAATTTCCCAGGGTTT
GAATTTGTATATCAAGAATTTTGGGTGAAAGTAATTGATGAAGAAAAAAT
TAAAGGGAGTTATTTTCCTGAATTTTGGCACAATTACCTTCATGCCAGGG
GTAGGCGGGATCCCTGGTGGAAATTAATAAGGGCTCTCGAATTTTGGGGC
GTTTTTCACCCCTGGAGGAAGCCTCCCCCGAGCCCTTGCAAAAAAAGAAG
GGGAAAAAGGCAATGTGTGACCACGACCCCTTTATGTTTGCCCGTTGCCC
TCCCCCGAGAAACAAAAAAAAAAAAGGGGGCACAGGCCTAGCGGGCTACT
TAGTTTTCTCAAAAGGGGATGAACCCATCACACAGTGGTGGGGCCCCCCC
CACGGTTGGT