EY679819

Overview
NameEY679819
Unique NameEY679819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.118e-16
Identity = 48/157 (30.57%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++  + L   F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.378e-16
Identity = 48/158 (30.38%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++  + L   F S G I SCK+  D    GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.024e-16
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.024e-16
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 7.024e-16
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.565e-15
Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 3
Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------TKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 542
            IF+ NL  S D  AL + F   GN+   ++  D  +G+S+GFGFV   +KE  + A  + NG  ++ + + V      ++RE  + +            N V+V NLA     + L+  F E G +  A V+ D D G+S+ FGFV + +A++   A+E+L+G   + R
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 257          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.044e-15
Identity = 45/157 (28.66%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++        F S G+I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V  L ++ + +++++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.044e-15
Identity = 48/157 (30.57%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+    L +++  + L   F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 5.946e-15
Identity = 45/157 (28.66%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++        F S G+I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V  L ++ + +++++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 7.766e-15
Identity = 48/160 (30.00%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   48 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 521
            ++S   N+ +  L + +  + L+  F + G I +C+I  D  +G S G+ FV F ++  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L   FG+YG+I    ++RD   G+ +   FV +   ++A +A+ ALN
Sbjct:  122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275          
The following BLAST results are available for this feature:
BLAST of EY679819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ELAV2_HUMAN4.118e-1630.57ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV2_XENLA5.378e-1630.38ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV4_RAT7.024e-1629.94ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE7.024e-1629.94ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN7.024e-1629.94ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ROC1_NICSY1.565e-1531.3629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ELAV3_MOUSE2.044e-1528.66ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV2_RAT2.044e-1530.57ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV3_HUMAN5.946e-1528.66ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
SXL_DROSU7.766e-1530.00Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679819 ID=EY679819; Name=EY679819; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGATTAGAATCATGTATTCCCATCGGGATCCTAGTATTCGG
AAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGA
TCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTT
GTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTG
CAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGG
CATGCTTATTAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGC
AGGAAAGAGAAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTC
AAAAACCTTGCTGAGTCAACTACAGATGAAGATTTGAAGAAATTTTTTGG
TGAGTATGGAACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAA
AATCCAAGTGTTTTGGATTTGTGAATTTTGAAAATGCAGATGATGCTGCC
AAAGCTGTTGAAGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGGTA
TGTTGGAAAAGCTCATAAAAAAATCTGAAAGAGAACAAAAGCTTAAAGGG
CAATTTGAGCAAGCCCAGGAAGGAAACTGTAAACAAATTTCCCAGGGTTT
GAATTTGTATATCAAGAATTTTGGGTGAAAGTAATTGATGAAGAAAAAAT
TAAAGGGAGTTATTTTCCTGAATTTTGGCACAATTACCTTCATGCCAGGG
GTAGGCGGGATCCCTGGTGGAAATTAATAAGGGCTCTCGAATTTTGGGGC
GTTTTTCACCCCTGGAGGAAGCCTCCCCCGAGCCCTTGCAAAAAAAGAAG
GGGAAAAAGGCAATGTGTGACCACGACCCCTTTATGTTTGCCCGTTGCCC
TCCCCCGAGAAACAAAAAAAAAAAAGGGGGCACAGGCCTAGCGGGCTACT
TAGTTTTCTCAAAAGGGGATGAACCCATCACACAGTGGTGGGGCCCCCCC
CACGGTTGGT
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