EY679819

Overview
NameEY679819
Unique NameEY679819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.766e-15
Identity = 45/157 (28.66%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V +L ++   +++++ F +YG  ITS +++    G S+  GF+ F+   +A +A++ LNG+K
Sbjct:   35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.014e-14
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 521
            N+ +  L + +  + L+  F + G I +C+I  D  +G S G+ FV F  +  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L   FG+YG I    ++RD   GK +   FV F   ++A +A+ ALN
Sbjct:  111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.730e-14
Identity = 53/175 (30.29%), Postives = 87/175 (49.71%), Query Frame = 3
Query:   69 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------------TKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 542
            IF+ NL  S D  AL + F   GN+   ++  D  +G+S+GFGFV   +KE  + A  + NG  ++ + + V      ++RE  + +                  N V+V NLA     + L+  F E G +  A V+ D D G+S+ FGFV + +A++   A+E+L+G   + R
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 263          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.260e-14
Identity = 47/159 (29.56%), Postives = 84/159 (52.83%), Query Frame = 3
Query:   51 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 521
            ++   N+ +  L + +  + L+  F + G I +C+I  D  +G S G+ FV F ++  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L   FG+YG+I    ++RD   G+ +   FV +   ++A +A+ ALN
Sbjct:  121 RASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.951e-14
Identity = 50/156 (32.05%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   63 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEA 515
            G +FI  L+      +L D F  FG +L C +  D + G+S+GFGF+ F+N +     + K   L+G +I+ K+      + ++E+E  A       +FV  +    T+E+ + FF ++G +  A +M D D G+ + FGFV +EN      AVEA
Sbjct:  163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRA-----IPREEQEKTA------KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN----ESAVEA 303          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.586e-14
Identity = 50/170 (29.41%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   30 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 530
            H D   R   G  N+ +  L +++    L   FSS G + S K+  D  +G S G+GFV + N + A+ AI+ LNG+ +  K + V     +   ET+    K  N+++  L  + T +D++  F  +G  I S V++    G S+   F+ F+   +A +A+ + NG K
Sbjct:    8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSETI----KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: MRD1_YARLI (Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica GN=MRD1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.121e-13
Identity = 44/160 (27.50%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG------FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN-VFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 524
            ++F+KNL+     + L D F +    L  ++      ++KG      FGFV+F +KE+A+ A   ++G +++  ++ +    R Q+ ET   K   ++ + +KNL    T +D++K FG +G++ +  V +  + +S+ F F  + +A +A  A+ AL G
Sbjct:  606 SVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQG 765          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: MRD1_EMENI (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans GN=mrd1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.121e-13
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 3
Query:   60 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV--------GHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 518
            T  +FIKNL+ S  +++L + F      +S +I T       G   S GFGF  F+ K  AQ A+  +NG  ++   + V            R++E     I  +   + +KNL    T +D++  FG YG + S  V +  D  ++ FGF +F +A +A  A++AL
Sbjct:  591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 757          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.121e-13
Identity = 45/158 (28.48%), Postives = 85/158 (53.80%), Query Frame = 3
Query:   66 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYG-TITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEALNGKK 530
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V +L ++   +++++ F +YG  ITS +++    G  S+  GF+ F+   +A +A++ LNG+K
Sbjct:   36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQK 187          
BLAST of EY679819 vs. ExPASy Swiss-Prot
Match: LARK_DROME (RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 44/161 (27.33%), Postives = 78/161 (48.45%), Query Frame = 3
Query:   54 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLAESTTDEDLKKFFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 536
            +GT  +FI NLD+      L   F  +G ++ C +        K +GFV  E ++  ++AI  LNG  +N+  + V     +  +   A  T    +FV NL + T   ++++ F +YGT+    ++R+       +GFV+ +   D   A++ LNG+  D
Sbjct:    4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV-----EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN-------YGFVHLDCVGDVQDAIKELNGRVVD 145          
The following BLAST results are available for this feature:
BLAST of EY679819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ELAV3_XENLA7.766e-1528.66ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
SXL_CERCA1.014e-1431.82Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
ROC1_NICPL1.730e-1430.2930 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
SXL_DROME2.260e-1429.56Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
YHKF_SCHPO2.951e-1432.05Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
ELV1B_XENLA8.586e-1429.41ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
MRD1_YARLI1.121e-1327.50Multiple RNA-binding domain-containing protein 1 O... [more]
MRD1_EMENI1.121e-1329.94Multiple RNA-binding domain-containing protein 1 O... [more]
ELAV3_XENTR1.121e-1328.48ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
LARK_DROME1.465e-1327.33RNA-binding protein lark OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679819 ID=EY679819; Name=EY679819; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGATTAGAATCATGTATTCCCATCGGGATCCTAGTATTCGG
AAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGA
TCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTT
GTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTG
CAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGG
CATGCTTATTAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGC
AGGAAAGAGAAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTC
AAAAACCTTGCTGAGTCAACTACAGATGAAGATTTGAAGAAATTTTTTGG
TGAGTATGGAACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAA
AATCCAAGTGTTTTGGATTTGTGAATTTTGAAAATGCAGATGATGCTGCC
AAAGCTGTTGAAGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGGTA
TGTTGGAAAAGCTCATAAAAAAATCTGAAAGAGAACAAAAGCTTAAAGGG
CAATTTGAGCAAGCCCAGGAAGGAAACTGTAAACAAATTTCCCAGGGTTT
GAATTTGTATATCAAGAATTTTGGGTGAAAGTAATTGATGAAGAAAAAAT
TAAAGGGAGTTATTTTCCTGAATTTTGGCACAATTACCTTCATGCCAGGG
GTAGGCGGGATCCCTGGTGGAAATTAATAAGGGCTCTCGAATTTTGGGGC
GTTTTTCACCCCTGGAGGAAGCCTCCCCCGAGCCCTTGCAAAAAAAGAAG
GGGAAAAAGGCAATGTGTGACCACGACCCCTTTATGTTTGCCCGTTGCCC
TCCCCCGAGAAACAAAAAAAAAAAAGGGGGCACAGGCCTAGCGGGCTACT
TAGTTTTCTCAAAAGGGGATGAACCCATCACACAGTGGTGGGGCCCCCCC
CACGGTTGGT
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