EY679815

Overview
NameEY679815
Unique NameEY679815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 8.074e-56
Identity = 98/159 (61.64%), Postives = 126/159 (79.25%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQ 565
            + A+ VAPF GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ + FIA++
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASK 165          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.199e-53
Identity = 95/157 (60.51%), Postives = 125/157 (79.62%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK+++YL+R+GWIPCLEF  + G+VYRE+  SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+ FIA
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIA 163          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.872e-53
Identity = 97/166 (58.43%), Postives = 127/166 (76.51%), Query Frame = 2
Query:   71 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556
            A  A    A++V+ FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R++++SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCI FI
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFI 166          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.431e-52
Identity = 93/129 (72.09%), Postives = 107/129 (82.95%), Query Frame = 2
Query:  173 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH+KSP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCI FIA
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIA 130          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 9.238e-52
Identity = 100/183 (54.64%), Postives = 131/183 (71.58%), Query Frame = 2
Query:   32 MASSMIS----SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556
            MASS+++    +A  A A  +    +++V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R +  SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCI FI
Sbjct:    1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFI 182          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.130e-48
Identity = 90/157 (57.32%), Postives = 117/157 (74.52%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+  APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK+++YL+R+ W+PCLEF  E G+VYRE+  SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q + FIA
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIA 161          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.893e-46
Identity = 84/117 (71.79%), Postives = 98/117 (83.76%), Query Frame = 2
Query:  209 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            M+VWPP GLKKFETLSYLPPL+ E LL E+NYL+  GWIP LEFE++ G+VYREH KSPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCI FIA
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIA 117          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.519e-43
Identity = 87/179 (48.60%), Postives = 116/179 (64.80%), Query Frame = 2
Query:   38 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCIIFIAAQAT 571
            +S+++SA V T   AS A  +  +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I+Y+I+SGW PC+EF+++ G V RE    PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC  FI  Q T
Sbjct:    2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPT 179          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.478e-41
Identity = 75/102 (73.53%), Postives = 91/102 (89.22%), Query Frame = 2
Query:  254 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            +YLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+ FIA
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIA 101          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.062e-31
Identity = 59/131 (45.04%), Postives = 87/131 (66.41%), Query Frame = 2
Query:  212 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQATKASRF 586
            KVW P   K++ET SYLPPL+++ + ++++Y+I +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F+  +   A+ +
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRPRNAAEY 160          
The following BLAST results are available for this feature:
BLAST of EY679815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_AEGTA8.074e-5661.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE2.199e-5360.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH2.872e-5358.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA2.431e-5272.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA9.238e-5254.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY2.130e-4857.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL9.893e-4671.79Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA3.519e-4348.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.478e-4173.53Ribulose bisphosphate carboxylase small chain clon... [more]
RBS_CHLMO1.062e-3145.04Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679815 ID=EY679815; Name=EY679815; organism=Citrus sinensis; type=EST; length=937bp
CTTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCT
CATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGC
ATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAAC
CAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAG
TCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACT
CTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAA
TTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGA
AAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGA
CGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAAC
CCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCAT
TCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAATGCATCATT
TTCATTGCTGCCCAAGCCACCAAGGCGTCTAGGTTCCCAATTAAATTTGT
GTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAA
TGATCATTCGATCCATGGGGGGGTCCGGTTTGGGTTTAATTTGGAACTTA
GGCTGGTGTTGCTGCCTGCCAAAACTTTTTTTGGTTTTCTCCCCCAATTT
GGCCTTTTTTTTTTTTTTTTTTAAAATAAATTTAAAAAATTGAAACCTCT
TTGTTTTCACTTTTCAAAAAAAAAAAAAAAAAGGGGCGGGCCCGCCCTAA
AAAGAACCCAGCGTAAAATTACAGGGGGGGGGAGCGACGATAGATAAGCA
ATCTAAAAGAAGGGGCAGCAAAAATTACAAAATTAGA
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