EY679774

Overview
NameEY679774
Unique NameEY679774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 1.410e-82
Identity = 165/237 (69.62%), Postives = 181/237 (76.37%), Query Frame = 2
Query:   65 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA +TMALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMG +EG + + GGPLGEV DP      +FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MAAATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR-IAGGPLGEVVDPLYPG-GSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 228          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.405e-82
Identity = 168/235 (71.49%), Postives = 181/235 (77.02%), Query Frame = 2
Query:   65 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA STMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMG +EG + + GGPLGEV DP +    +FDPLG    +   L  LKVKE KN +    S   FF  AI
Sbjct:    1 MAASTMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR-IAGGPLGEVTDP-IYPGGSFDPLGLA-DDPEALAELKVKELKNGRLAMFSMFGFFVQAI 223          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 5.357e-82
Identity = 158/231 (68.40%), Postives = 176/231 (76.19%), Query Frame = 2
Query:  104 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMG +EG + + GGPLGEV DP +    +FDPLG   ++      LKVKE KN +    S   FF  AI
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR-IAGGPLGEVTDP-IYPGGSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 241          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 1.010e-80
Identity = 162/244 (66.39%), Postives = 181/244 (74.18%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWA QV+LMG +EG + + GGPLGEV DP +     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR-VAGGPLGEVTDP-IYPGGNFDPLGLA-DDPDAFAELKVKEIKNGRLAMFSMFGFFVQAI 245          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.723e-80
Identity = 161/244 (65.98%), Postives = 182/244 (74.59%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWA QV+LMG +EG + + GGPLGEV DP +     FDPLG    +     ++KVKE KN +    S   FF  AI
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYR-VAGGPLGEVTDP-IYPGGNFDPLGLA-DDPDAFADVKVKEIKNGRLAMFSMFGFFVQAI 245          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 1.046e-77
Identity = 157/239 (65.69%), Postives = 176/239 (73.64%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MATST AL+S+F G+ +      NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWA QV+LMG +EG + + GGPLGEV DP +    +FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MATSTAALTSTFSGQQLKPV---NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR-VAGGPLGEVEDP-IYPGGSFDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 232          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.973e-77
Identity = 156/237 (65.82%), Postives = 173/237 (73.00%), Query Frame = 2
Query:   65 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA +TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWA QVVLMG +EG  ++ GG LGEV DP      +FDPLG G    R    LKVKE KN +    S   FF  AI
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEG-YHVAGGRLGEVVDPLYLG-GSFDPLGLGDDPER-FAELKVKEIKNGRLAMFSMFGFFVQAI 231          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.777e-77
Identity = 146/198 (73.74%), Postives = 157/198 (79.29%), Query Frame = 2
Query:  173 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMG +EG + + GGPLGEV DP      +FDPLG   +       LKVKE KN +    S   FF  AI
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR-IAGGPLGEVVDPLYPG-GSFDPLGLA-EVPEAFAELKVKELKNGRLAMFSMFGFFVPAI 195          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 5.737e-76
Identity = 156/240 (65.00%), Postives = 175/240 (72.92%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MATS +   S+F G+        NEL        GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG +EG + + GGPLGE  DP +     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-VGGGPLGEGLDP-IYPGGAFDPLGLA-DDPDAFAELKVKEIKNGRLAMFSMFGFFVQAI 232          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 9.786e-76
Identity = 152/240 (63.33%), Postives = 175/240 (72.92%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA +T   S++  G++  L    NELS         R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMG +EG + + GGPLGEV DP +    +FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MAAATAMHSTALAGQS--LVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR-VAGGPLGEVTDP-IYPGGSFDPLGLA-DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAI 235          
The following BLAST results are available for this feature:
BLAST of EY679774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_ORYSJ1.410e-8269.62Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_SOYBN2.405e-8271.49Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY5.357e-8268.40Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY1.010e-8066.39Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB2A_PYRPY1.723e-8065.98Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_POLMU1.046e-7765.69Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB48_MAIZE3.973e-7765.82Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_PEA6.777e-7773.74Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_GOSHI5.737e-7665.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_PHYPA9.786e-7663.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-H03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679774 ID=EY679774; Name=EY679774; organism=Citrus sinensis; type=EST; length=978bp
CCACGCGTCCGCCCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACT
CCGATCATTGTAAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTC
GTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGG
TGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTA
GCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGC
GAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGA
CACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAAC
TCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTC
TTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTG
GTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGG
GGAACCCAAGCCTGATCCACGCTCAAAGCATCTTGGCCATCTGGGCTTTG
CAGGTGGTCTTGATGGGAACCCTTGAGGGGTTACAGAATTTGCTGGGAGG
GCCCCTCGGTGAAGTGAACGACCCTTTTGTAACCCAGGTGGACACTTTTG
ATCCATTGGGGTTTGGGCGGAAGAACGGAAGGCTTTTACCTAACTTAAAG
GTTAAGGAAAACAAAAATGCAAAGTTTGGCTATATCTCCAATGTTTGGTT
TTTCAATTCAGCCATTAACCACAAGAAAGGGAACGGATAAAAAAACTGAC
CAAACCCTTTGTTAAATCCTTTACATAATTATAGCAACGGGGAAACATAC
AAATACTTATATCCCTGTGAAAATAGACTAATCGTTAAAAAAGAAAATTT
CTCACTCTTACGTGTTCTACGGTAAAAAAACATAAATCCCTAAAATTTAA
ACACCCTGAGCGAAGAAATTTTCAAATT
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