EY679774

Overview
NameEY679774
Unique NameEY679774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.847e-75
Identity = 154/239 (64.44%), Postives = 176/239 (73.64%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA+QVVLMG +EG + + GGPLGE  D  V     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-VGGGPLGEGLDK-VYPGGAFDPLGLA-DDPDTFAELKVKELKNGRLAMFSMFGFFVQAI 230          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.847e-75
Identity = 154/239 (64.44%), Postives = 176/239 (73.64%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA+QVVLMG +EG + + GGPLGE  D  V     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-VGGGPLGEGLDK-VYPGGAFDPLGLA-DDPDTFAELKVKELKNGRLAMFSMFGFFVQAI 230          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.846e-74
Identity = 154/239 (64.44%), Postives = 172/239 (71.97%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MAT++   SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWA QVVLMG +EG + + GG LGE  DP +     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR-VGGGTLGEGLDPLLPG-GAFDPLGLA-DDPEACAELKVKEIKNGRLAMFSMFGFFVQAI 233          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 4.111e-74
Identity = 153/240 (63.75%), Postives = 173/240 (72.08%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MATS +   S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG +EG + + GGPLGE  D  +     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MATSAIE-QSAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR-VGGGPLGEGLDK-IYPGGAFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 232          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 2.040e-73
Identity = 153/240 (63.75%), Postives = 173/240 (72.08%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MAT  +   S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EG + + GGPLGE  D  +     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MATCAIQ-QSAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR-VGGGPLGEGLDK-IYPGGAFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 232          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 2.040e-73
Identity = 147/204 (72.06%), Postives = 162/204 (79.41%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLG 661
            MATST+   S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWA QVVLMG +EG + + GGPLGE  D        FDPLG
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYR-VGGGPLGEGLDQLYPG-GAFDPLG 197          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 1.013e-72
Identity = 152/240 (63.33%), Postives = 171/240 (71.25%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MATS +   S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG +EG + + GGPLGE  D  +     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR-VGGGPLGEGLDK-IYPGGAFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 232          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.946e-72
Identity = 141/206 (68.45%), Postives = 158/206 (76.70%), Query Frame = 2
Query:  149 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG +EG + + GGPLGE  D  +     FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR-VGGGPLGEGLDK-IYPGGAFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 204          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 5.026e-72
Identity = 143/205 (69.76%), Postives = 158/205 (77.07%), Query Frame = 2
Query:  152 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EG + + GGPLGE  DP       FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR-VGGGPLGEGLDPLYPG-GAFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 231          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.494e-71
Identity = 153/240 (63.75%), Postives = 169/240 (70.42%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNEL----SNGG--RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            MATS +   S+F GK       GNE      N G  R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG +EG + + GGPLGE  DP       FDPLG    +      LKVKE KN +    S   FF  AI
Sbjct:    1 MATSAIQ-QSAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR-VGGGPLGEGLDPLYPG-GAFDPLGLA-DDPDSFAELKVKELKNGRLAMFSMFGFFVQAI 232          
The following BLAST results are available for this feature:
BLAST of EY679774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB23_ORYSJ2.847e-7564.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.847e-7564.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.846e-7464.44Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_TOBAC4.111e-7463.75Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC2.040e-7363.75Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_SILPR2.040e-7372.06Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_PETSP1.013e-7263.33Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC2.946e-7268.45Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI5.026e-7269.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA2.494e-7163.75Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-H03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679774 ID=EY679774; Name=EY679774; organism=Citrus sinensis; type=EST; length=978bp
CCACGCGTCCGCCCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACT
CCGATCATTGTAAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTC
GTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGG
TGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTA
GCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGC
GAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGA
CACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAAC
TCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTC
TTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTG
GTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGG
GGAACCCAAGCCTGATCCACGCTCAAAGCATCTTGGCCATCTGGGCTTTG
CAGGTGGTCTTGATGGGAACCCTTGAGGGGTTACAGAATTTGCTGGGAGG
GCCCCTCGGTGAAGTGAACGACCCTTTTGTAACCCAGGTGGACACTTTTG
ATCCATTGGGGTTTGGGCGGAAGAACGGAAGGCTTTTACCTAACTTAAAG
GTTAAGGAAAACAAAAATGCAAAGTTTGGCTATATCTCCAATGTTTGGTT
TTTCAATTCAGCCATTAACCACAAGAAAGGGAACGGATAAAAAAACTGAC
CAAACCCTTTGTTAAATCCTTTACATAATTATAGCAACGGGGAAACATAC
AAATACTTATATCCCTGTGAAAATAGACTAATCGTTAAAAAAGAAAATTT
CTCACTCTTACGTGTTCTACGGTAAAAAAACATAAATCCCTAAAATTTAA
ACACCCTGAGCGAAGAAATTTTCAAATT
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