EY679774

Overview
NameEY679774
Unique NameEY679774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.200e-18
Identity = 66/195 (33.85%), Postives = 98/195 (50.26%), Query Frame = 2
Query:  215 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVN-DPF-----VTQVDT-------FDPLGFGRKNGRLLPNLKVKENKNAKFGYIS--NVWF 751
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++ +++VL+G  EG +       G VN DP      +T  D        FDPLG+G  +   +  L+ KE KN +   ++    WF
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.179e-18
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  176 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVN-DPF-----VTQVDT-------FDPLGFGRKNGRLLPNLKVKENKNAKFGYIS--NVWF 751
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++ +++VL+G  EG +       G VN DP      +T  D        FDPLG+G  +   +  L+ KE KN +   ++    WF
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.074e-17
Identity = 74/231 (32.03%), Postives = 105/231 (45.45%), Query Frame = 2
Query:   65 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWF 751
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A++ + +   E  + +   P     +        FDPLGF  K+      LK+KE KN +   ++ V F
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDP-----EKKKYPGGAFDPLGFS-KDPAKFEELKLKEIKNGRLAMLAFVGF 205          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.324e-15
Identity = 48/93 (51.61%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  488 LDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            LDYLGNPSL+HAQSILAIWA QV+LMG +EG +    GPLGE  D  +    +FDPL     +      LKVKE KN +    S   FF  AI
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAED-LLYPGGSFDPLA-SLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 91          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.781e-14
Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  248 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWF 751
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A++ + +  +E  ++     + + ++        FDPLG+  K+      LKVKE KN +   ++ V F
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRS-----MEKDSEKKKYPGGAFDPLGYS-KDPAKFEELKVKEIKNGRLALLAIVGF 206          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.099e-13
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  509 SLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            SL+HAQSILAIWA QVVLMG +EG + + GGPLGEV DP      +FDPLG   ++      LKVKE KN +    S   FF  AI
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYR-IAGGPLGEVVDPLYPG-GSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 234          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.099e-13
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  509 SLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            SL+HAQSILAIWA QVVLMG +EG + + GGPLGEV DP      +FDPLG   ++      LKVKE KN +    S   FF  AI
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYR-IAGGPLGEVVDPLYPG-GSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 234          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.099e-13
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  509 SLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            SL+HAQSILAIWA QVVLMG +EG + + GGPLGEV DP      +FDPLG   ++      LKVKE KN +    S   FF  AI
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYR-IAGGPLGEVVDPLYPG-GSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 83          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.099e-13
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  509 SLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            SL+HAQSILAIWA QVVLMG +EG + + GGPLGEV DP      +FDPLG   ++      LKVKE KN +    S   FF  AI
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYR-IAGGPLGEVVDPLYPG-GSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 232          
BLAST of EY679774 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.099e-13
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  509 SLIHAQSILAIWALQVVLMGTLEGLQNLLGGPLGEVNDPFVTQVDTFDPLGFGRKNGRLLPNLKVKENKNAKFGYISNVWFFNSAI 766
            SL+HAQSILAIWA QVVLMG +EG + + GGPLGEV DP      +FDPLG   ++      LKVKE KN +    S   FF  AI
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYR-IAGGPLGEVVDPLYPG-GSFDPLGLA-EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 232          
The following BLAST results are available for this feature:
BLAST of EY679774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB12_SOLLC3.200e-1833.85Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY4.179e-1833.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU2.074e-1732.03Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB21_RAPSA4.324e-1551.61Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB11_SOLLC4.781e-1433.53Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2F_SOLLC3.099e-1353.49Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.099e-1353.49Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.099e-1353.49Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.099e-1353.49Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.099e-1353.49Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-H03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679774 ID=EY679774; Name=EY679774; organism=Citrus sinensis; type=EST; length=978bp
CCACGCGTCCGCCCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACT
CCGATCATTGTAAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTC
GTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGG
TGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTA
GCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGC
GAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGA
CACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAAC
TCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTC
TTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTG
GTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGG
GGAACCCAAGCCTGATCCACGCTCAAAGCATCTTGGCCATCTGGGCTTTG
CAGGTGGTCTTGATGGGAACCCTTGAGGGGTTACAGAATTTGCTGGGAGG
GCCCCTCGGTGAAGTGAACGACCCTTTTGTAACCCAGGTGGACACTTTTG
ATCCATTGGGGTTTGGGCGGAAGAACGGAAGGCTTTTACCTAACTTAAAG
GTTAAGGAAAACAAAAATGCAAAGTTTGGCTATATCTCCAATGTTTGGTT
TTTCAATTCAGCCATTAACCACAAGAAAGGGAACGGATAAAAAAACTGAC
CAAACCCTTTGTTAAATCCTTTACATAATTATAGCAACGGGGAAACATAC
AAATACTTATATCCCTGTGAAAATAGACTAATCGTTAAAAAAGAAAATTT
CTCACTCTTACGTGTTCTACGGTAAAAAAACATAAATCCCTAAAATTTAA
ACACCCTGAGCGAAGAAATTTTCAAATT
back to top