EY720138

Overview
NameEY720138
Unique NameEY720138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_BACSU (MutS2 protein OS=Bacillus subtilis GN=mutSB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 57/194 (29.38%), Postives = 92/194 (47.42%), Query Frame = 1
Query:   37 ELEEKIGFCIDCKLLIILDRASEDLELIRAERK----RNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            +LE  I  CID    + LD ASE L  IR + +    R  + L+S+L+  +A       +   ++T R  R  + +K  ++     GI  + SSSGAT F+EP+  V+ NN   +    E  E   IL +LT    +   E+   +  +  +D  FA+A +A  +    PI++    +RL      +  +HPLL
Sbjct:  131 DLERDINSCIDDHGEV-LDHASETLRGIRTQLRTLESRVRDRLESMLRSSSASKM----LSDTIVTIRNDRFVIPVKQEYRSSY-GGIVHDTSSSGATLFIEPQAIVDMNNSLQQAKVKEKQEIERILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYAKAVKATKPIMNDTGFIRL------KKARHPLL 312          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOTH (MutS2 protein OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   85 ILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            I D AS  L  IR + +   E++   L  +         I +P++T R  R  + +K  ++  +P G+  + S+SGAT F+EP   VE NN    L   E AE   IL  LT  I      +K  +  +  +D  FA+A  +   + VCP+L+       +  I I+  +HPLL
Sbjct:  146 IADNASPTLANIRRQIRNAQESIKDKLNDIIRSSRYQKYIQEPIVTLRGDRYVIPVKQEYRTEIP-GLIHDSSASGATIFIEPMAVVEANNHIRELKIKEQAEIEKILGELTGEIRGIVDSLKSNVSILGRLDFIFAKARLSLDYNCVCPVLND------EHKILIKKGRHPLL 312          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_CLOPE (MutS2 protein OS=Clostridium perfringens GN=mutS2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 51/174 (29.31%), Postives = 83/174 (47.70%), Query Frame = 1
Query:   85 ILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            I D AS+ L  IR   K    ++   +  +     Q   +   L T R  R  + +KA +K  +P G+  + SS+GAT F+EP   V  NN    L   E AE   IL+ L+  + K+   IK   + ++E+D  FA+A +   + G  PI++       +  I++   +HPL+
Sbjct:  145 IADSASDKLYSIRRSLKEKNSSIRDKVNSIVRSNTQY--LQDSLYTVRGDRYVIPVKAEYKSQVP-GLVHDQSSTGATLFIEPTALVNLNNEIKELMLKERAEIERILAELSVLVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLGGTLPIVNE------EGVIDLMDARHPLI 309          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_STAEQ (MutS2 protein OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 50/180 (27.78%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   70 CKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVL-EIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            C    + D AS  L+ IR++  R  + +   L ++         +   ++T R  R  + +KA ++    +GI  + S+SG T ++EP   VE NN   RL N E  E   IL+ LT  +  +E +   + + V+ +ID   A+A +A  + G  P          D +I + +  HPLL
Sbjct:  142 CDAHDLFDHASYTLQSIRSKISRTNQRIRQNLDRIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDF-NGIVHDQSASGQTLYIEPNSVVEMNNQISRLRNDEAVERERILTELTGFV-SAEADALLIAESVMGQIDFLIAKARYARTIKGTKPTFKE------DRTIYLPNAFHPLL 313          
BLAST of EY720138 vs. ExPASy Swiss-Prot
Match: MUTS2_EUBR3 (MutS2 protein OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=mutS2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   85 ILDRASEDLELIRAERKRNMENLDSLLKKVAAKIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAXIXKSEREIKYLMDRVLEIDLAFARAGFAPWMDGVCPILSSQSHVRLDSSINIESIKHPLL 606
            I D AS +L  IR   +   + + + L K+         +   ++T R  R C+ +KA  K  +P G+  + SS+G+T F+EP   V  NN    L   E  E   IL+ L+  +  +   ++   + + E+D  FA+A  A   +GV P  ++  H      INI   +HPLL
Sbjct:  145 IADDASPELFKIRKSIRGMNDRIHAQLTKLMNNSTTRTYLQDAVVTMRDGRYCLPVKAEAKGNVP-GMMHDQSSTGSTLFIEPMAVVNLNNELKELFIKEQEEIEKILAALSDKVAMNAAALEQDYEILSELDFIFAKANLAKSYNGVAPDFNTDGH------INIRKGRHPLL 311          
The following BLAST results are available for this feature:
BLAST of EY720138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MUTS2_BACSU3.073e-1129.38MutS2 protein OS=Bacillus subtilis GN=mutSB PE=3 S... [more]
MUTS2_CLOTH4.013e-1130.46MutS2 protein OS=Clostridium thermocellum (strain ... [more]
MUTS2_CLOPE4.013e-1129.31MutS2 protein OS=Clostridium perfringens GN=mutS2 ... [more]
MUTS2_STAEQ8.940e-1127.78MutS2 protein OS=Staphylococcus epidermidis (strai... [more]
MUTS2_EUBR38.940e-1129.31MutS2 protein OS=Eubacterium rectale (strain ATCC ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-F01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720138 ID=EY720138; Name=EY720138; organism=Citrus sinensis; type=EST; length=852bp
CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCAGAGTTAGAGGAAAA
AATTGGATTTTGCATAGATTGCAAGCTTTTAATTATCCTTGATAGAGCTA
GTGAGGATTTGGAGCTTATTAGGGCAGAAAGGAAGAGGAACATGGAAAAT
CTGGATTCTCTATTGAAGAAGGTAGCAGCTAAAATTTTCCAGGCTGGGGG
CATTGACAAACCCTTGATAACCAAGCGCCGGTCTAGAATGTGTGTGGGTA
TTAAGGCTTCTCACAAGTATTTACTTCCAGATGGTATAGCCCTGAATGTT
AGCAGTTCTGGTGCAACATATTTCATGGAACCTAAAGGGGCAGTTGAGTT
CAACAATATGGAAGTGAGGCTTTCAAACTCTGAGATAGCTGAGGAAACAG
CCATTTTGAGCTTGCTTACTGCANAAATANCGAAATCAGAAAGAGAGATA
AAGTATCTGATGGATAGAGTTCTAGAAATTGATCTTGCTTTTGCAAGAGC
TGGTTTTGCTCCATGGATGGATGGGGTCTGTCCCATTTTAAGTTCACAGA
GCCATGTCAGGCTTGATTCCAGTATAAACATTGAAAGCATCAAACATCCA
TTGCTTCTTGGGGTCCTCTTTAAGATGTTTGTCAGGCTGCTTCATCAACT
CTAATCCACTAAAATCGGATGTGGAAGATAGTGAAATGACCGGTGCAAGT
TTGTCAACAAGAATTTCGGATTTCCCTGGTACAATAGACCTAAAGTTTAA
TGCGAACAAGAGGGGGGTGATCGCGGGTCCTAGAGTGGGCGCGGAAGGGG
TTCCTGGATGAGCTGGGCCTGGGGCCTCGATTGGGAAGGTGGTTGGAGTT
TC
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