EY679662

Overview
NameEY679662
Unique NameEY679662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679662 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.989e-11
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  353 RIV*VSYICSLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKGQTYYSKAFAACYPKEMKNLTLSFKEP*PGEELFPHIPNPLIHK 673
            ++V  S    LQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLK +    +        + + L    K    G  + PHI   L++K
Sbjct:   18 KVVSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGD-EELDTLIKATIAGGGVIPHIHRYLMNK 123          
BLAST of EY679662 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.989e-11
Identity = 44/97 (45.36%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  383 LQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKGQTYYSKAFAACYPKEMKNLTLSFKEP*PGEELFPHIPNPLIHK 673
            +QFPVGR+HR LK               YTAAILEYLTAEVLELAGNASKDLK +    +        + + L    K    G  + PHI   LI+K
Sbjct:   40 IQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD-EELDTLIKGTIAGGGVIPHIHKSLINK 135          
BLAST of EY679662 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.989e-11
Identity = 44/97 (45.36%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  383 LQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKGQTYYSKAFAACYPKEMKNLTLSFKEP*PGEELFPHIPNPLIHK 673
            LQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLK +    +        + + L    K    G  + PHI   LI+K
Sbjct:   39 LQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD-EELDTLIKGTIAGGGVIPHIHKSLINK 134          
BLAST of EY679662 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.803e-11
Identity = 43/97 (44.33%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  383 LQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKGQTYYSKAFAACYPKEMKNLTLSFKEP*PGEELFPHIPNPLIHK 673
            +QFPVGR+HR LK               YTA+ILEYLTAEVLELAGNASKDLK +    +        + + L    K    G  + PHI   LI+K
Sbjct:   37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD-EELDTLIKGTIAGGGVIPHIHKSLINK 132          
The following BLAST results are available for this feature:
BLAST of EY679662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
H2AV_CAEEL3.989e-1142.06Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AV2_ORYSJ3.989e-1145.36Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ORYSJ3.989e-1145.36Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV1_ARATH6.803e-1144.33Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679662 ID=EY679662; Name=EY679662; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGTAGATTTCTTAGTGAGTCCATTATAAATGCGGTTAAGAG
TAAAGAAAATATTTAATGCTTTTTGTAAAGTGGTAAAACTTTCGACATGG
TTTTGATTGACTAATGGCATCTCTGTTTGAGCTATTTGAATGTTGACTGT
TCTTACGAGCTGGTTGTTGAGCCTGATAATATTTTTTTTTTTTTGACTTT
TGTTTCCAATGGGTGTATTTGTTATGGCAGAAGTTAGTTGCAGTAACGTT
TCCAGATTTGTAGCCTTTATCATGTCAAGGCACAGTAGGTGCCCTATTCA
AGATGTGCTCAGACAGGATTATGCAAACTCCCTGAATTTCCTTCAGTTTT
TTCGTATTGTATAAGTTAGTTACATTTGTTCCTTGCAGTTCCCAGTGGGA
AGGGTCCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGG
CGCAACAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCG
AAGTGTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAAGGTCAAACG
TATTACTCCAAGGCATTTGCAGCTTGCTATCCGAAGGAGATGAAAAACTT
GACACTCTCATTTAAGGAACCATAGCCGGGGGAAGAATTATTCCCTCATA
TCCCCAATCCCCTCATCCATAAAATCCTCCCAAAGAGTAATTTCGTGACC
CCCTCCTCCCCTCGGCTTTTTTTATGGGTTGAATTTTTTCCTTGGCTAAA
ATATCTAAATTGAAAAATGGATGGCCAAAATTGTTTTAATGGCTAGGAAA
TCTGCTTTCCTCCCACCCACATTTTCAGGAAGCCACCAAAATTTGGGGGC
CTGGTTTTTTTCCCCATTTTGGGATTTTGAAACAGTGTTAACTCTTTTAT
TTTAAAAAAAAATTTTTAAATTCTTTTCTCCTTTTGTTTTTCTATCTTCA
AGATAAAAAACAGAAATAAAAAAAGAGGGGGGGGGGCCGCGCTTTATTAG
GGAAGAATAT
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