EY679640

Overview
NameEY679640
Unique NameEY679640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length999
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 5.067e-59
Identity = 105/171 (61.40%), Postives = 127/171 (74.27%), Query Frame = 1
Query:  151 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            T +PA  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL+TH  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +VEN  V    WT+TDFRTG
Sbjct:    2 TQMPAGDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGSGGGTSAKDELGNAVTASGWLSTHPAGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTG 172          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.129e-58
Identity = 105/167 (62.87%), Postives = 124/167 (74.25%), Query Frame = 1
Query:  163 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH +V + KV   PWTETDFRTG
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTG 173          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.129e-58
Identity = 105/167 (62.87%), Postives = 124/167 (74.25%), Query Frame = 1
Query:  163 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH +V + KV   PWTETDFRTG
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTG 173          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.129e-58
Identity = 104/164 (63.41%), Postives = 121/164 (73.78%), Query Frame = 1
Query:  172 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L     GDR L +GLKGDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTETDFRTG
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKFLENRNAGDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTG 173          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.925e-58
Identity = 104/171 (60.82%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  151 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            T + +  VP MG+RQ MNLL  G+V+      L P A +F PP    +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ +VEN  V    WTETDFRTG
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTG 172          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.925e-58
Identity = 104/171 (60.82%), Postives = 126/171 (73.68%), Query Frame = 1
Query:  151 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            T +PA  VP MG+RQ MNLL  G+V+      L P A +F PP     GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +V+N  V    WTETDFRTG
Sbjct:    2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTG 172          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.925e-58
Identity = 102/164 (62.20%), Postives = 123/164 (75.00%), Query Frame = 1
Query:  172 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            VPDMG+RQ MNLL  G V+      L P   +F PP  G+ GGGTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA V++  +V  PWTETDFRTG
Sbjct:   10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTG 173          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 3.284e-58
Identity = 104/171 (60.82%), Postives = 124/171 (72.51%), Query Frame = 1
Query:  151 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  VEN  V    WTETDFRTG
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTG 172          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.284e-58
Identity = 104/171 (60.82%), Postives = 124/171 (72.51%), Query Frame = 1
Query:  151 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 663
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  VEN  V    WTETDFRTG
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTG 172          
BLAST of EY679640 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 3.284e-58
Identity = 103/164 (62.80%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  172 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANV-ENGKVVFVPWTETDFRT 660
            VPD+G+RQ MNLL  G ++      L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA V ++ K+V   WTETDFRT
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRT 173          
The following BLAST results are available for this feature:
BLAST of EY679640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_SYNPW5.067e-5961.40Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNP61.129e-5862.87Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE71.129e-5862.87Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP1.129e-5863.41Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_SYNSC1.925e-5860.82Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNS31.925e-5860.82Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_MASLA1.925e-5862.20Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRI_PROMM3.284e-5860.82Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM33.284e-5860.82Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIB_SYNY33.284e-5862.80Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679640 ID=EY679640; Name=EY679640; organism=Citrus sinensis; type=EST; length=999bp
CCACGCGTCCGAATTTTACCAAGCTTCTTGAAATAGCTATGCTCAAGCAA
GGGTGGTATGTTCTGTCCATCAAGAGCTTTTCTTGTGAAACCAGCAAGGA
CCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCT
ACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCAT
GAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGG
TTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGT
GGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCTGATTG
GCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATTGAAGG
GAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCATAT
GGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAATTC
AGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAACC
AAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTCAT
GCCAACGTTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACAGA
TTTCAGAACTGGGTGAAGCTCCATGGTGGGGCTTAAACTTGTTCGGGTGC
CTGTGCTTTTCATATCCAGTTTTTGGGCCGGTCGGTTTGCTTTGCCGTAA
TGCTTAAACCTACCGGAACGGAAACTTGCTTTATCAAAATGAAGCCTCCC
AACATGTAAAGCTACTTGGGTTGGAACCCTGCTATCCTTTGCATCTTGGG
AAACCTTGAAAATTTTTTCCTTTATCCCTTTCCCTTCTTTTGGTTCCTAA
AAAATTTCAAACCCCTCACAAAGTGGAAAGGGCCCACACCTTCCCACGGT
GGGGAAAAAAATTTTTTTTTCCCTTTTTATTTAAAAAAAAAAAAATTAT
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