EY679635

Overview
NameEY679635
Unique NameEY679635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679635 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.561e-21
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  154 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQR--------LQERIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 525
            W ++   +  F F W+L    K+ P+  KT P          L +    LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LWVPFC+K+ ++ R+P  YF
Sbjct:  120 WTMSVAGDVWFGFSWLLNQLPKFNPV--KTIPDLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of EY679635 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.561e-21
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  154 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQR--------LQERIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 525
            W ++   +  F F W+L    K+ P+  KT P          L +    LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LWVPFC+K+ ++ R+P  YF
Sbjct:  120 WTMSVAGDVWFGFSWLLNQLPKFNPV--KTIPDLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of EY679635 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.698e-20
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  154 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQERIQE------LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 525
            W  +   E  F F W+L    K  P+        L+ R         LP +D+FVTTAD   EP + T N++LS+LA DYPV +  CY+SDD+   L + ++ EA+KFA LWVPFC+K+ ++ R P  YF
Sbjct:  136 WVTSIAGEFWFGFSWLLDQLPKLNPINRVPDLAVLRRRFDHADGTSSLPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYF 265          
BLAST of EY679635 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.239e-20
Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  154 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQERIQE--LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 525
            W+++   +  F   W+L    K  P+        L+ R  +  LP +D+F+ T D   EP + T+N++LS+LA DYP  + A Y+SDD  S  ++  L+E ++FA LWVPFC+K+ V+ RAP  YF
Sbjct:  108 WWISIAGDFWFGVTWLLNQASKLNPVKRVPDLSLLRRRFDDGGLPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYF 233          
BLAST of EY679635 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 3.240e-16
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  385 KLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKE*EKLSQNIRTCSQ 633
            +LACYVSDD CSP+ +Y+L EA+ FA+ WVPFC+++ V +RAPFRYF               DW  MK E +KL + I    +
Sbjct:  173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYFASAPEFGPADRKFLDDWTFMKSEYDKLVRRIEDADE 255          
The following BLAST results are available for this feature:
BLAST of EY679635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF3_ORYSJ2.561e-2142.42Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI2.561e-2142.42Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF6_ORYSJ3.698e-2040.77Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF9_ORYSJ8.239e-2038.10Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLH3_ORYSJ3.240e-1645.78Putative cellulose synthase-like protein H3 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-D03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679635 ID=EY679635; Name=EY679635; organism=Citrus sinensis; type=EST; length=1034bp
CTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACGAAAAAGTTTT
TCATAAAAACACATATCATAGGGCTTTAGATGTTATCATCTTGTTCCTTC
TTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAATCATGGATTT
GCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTTTCATCTGGAT
TCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAAACATATCCCC
AACGTCTCCAAGAAAGGATACAGGAGCTGCCCCCAGTGGACATGTTTGTG
ACAACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTAAACACAGT
GCTGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGCTTGCTATG
TTTCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTGTTGAAGCT
TCTAAATTTGCTAAGCTTTGGGTTCCATTCTGTAAAAAGTATAATGTTCA
AATTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTCCGATTCCA
GTTCAGGGGAACTCCTGCAAGACTGGAAAAACATGAAGAAAGAATAAGAA
AAACTTAGCCAAAACATAAGAACATGCAGCCAAAAAATCTTCTTTTTTTG
AATTCAACGGAAAAAAATGACTGGTTTTTCCCCAAAACGAAACCCCTGAA
TCCTCCCACAAATATTAAAGGTTATTTCGGAAAAAAAAAGGAAGGTCTCC
CAAATTAAAATCCCCCATTTAATTTTACTATTCAAGAAAAGAAAAGGCCA
AACCATTCCCCTTCCCTAACAGAGGCGGGGGGGCCTAGAAGGGTTTTGGA
CTGGCAAGCTATGTAGGCCCACCATATCCCCAAAAATTGGTTCTTTTCCA
CCCTATTGGGTGTTTGCAACTGGGGGGGTCGCCAAGGAAAAAAGAAAAAA
AAAAATTTTGCGGTGTTTATTCTTATTCTCTCTCCCCGATTTTTTTTTCT
TTAAAATGAAATCAAAAACGCAAAAAAAAATTTA
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