EY679633

Overview
NameEY679633
Unique NameEY679633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679633 vs. ExPASy Swiss-Prot
Match: GLYR1_DROPS (Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18401 PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 8.429e-17
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  209 CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISQAITSKGGHFLEAPVSGSKRPAETG 493
            C   V  GA V  +P +V++   I    ++DP  A  +VF   GVL+ +    K Y++MSTVD +TS+ I + I    G +LEA + GS++ A  G
Sbjct:  361 CQPFVEAGAEVKDTPMDVVEAADIIFCCVSDPKGAKDLVFGNCGVLQLKDLRNKAYVEMSTVDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAADG 456          

HSP 2 Score: 44.2838 bits (103), Expect = 8.429e-17
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 1
Query:   97 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 204
            ++  GFLGLG+MG  I  +L+  G KV VWNRT+ K
Sbjct:  325 ELTFGFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDK 360          
BLAST of EY679633 vs. ExPASy Swiss-Prot
Match: GLYR1_DROME (Putative oxidoreductase GLYR1 homolog OS=Drosophila melanogaster GN=CG4747 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.284e-16
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  209 CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISQAITSKGGHFLEAPVSGSKRPAETG 493
            C      GA V  +P +V++   +    ++DP  A  +VF   GVL+ +    K Y++MST+D +TS+ I + I    G +LEA + GS++ A  G
Sbjct:  351 CQPFAEAGAEVKDTPMDVVEAADVIFCCVSDPKGAKDLVFGNCGVLQLKDLNNKAYVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEG 446          

HSP 2 Score: 43.8986 bits (102), Expect = 5.284e-16
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 1
Query:  109 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 204
            GFLGLG+MG  I  +L+  G KV VWNRT+ K
Sbjct:  319 GFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDK 350          
BLAST of EY679633 vs. ExPASy Swiss-Prot
Match: YFJR_BACSU (Uncharacterized oxidoreductase yfjR OS=Bacillus subtilis GN=yfjR PE=3 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 4.877e-13
Identity = 38/112 (33.93%), Postives = 52/112 (46.43%), Query Frame = 2
Query:  212 DELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISQAITSKGGHFLEAPVSG-------------SKRPAETGQTSNP 508
            ++LV  GA    +P    K   I I MLAD  +  +V F + G+LE +     +I MST+  E S K++ A   KG  FL APV G             +  PAE  Q + P
Sbjct:   37 EDLVTEGAQAADTPRLAAKSADIVITMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKP 148          

HSP 2 Score: 38.891 bits (89), Expect = 4.877e-13
Identity = 16/35 (45.71%), Postives = 27/35 (77.14%), Query Frame = 1
Query:  100 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 204
            M++  +GLG MG+ I+ N+L+ G+++TV+NRT  K
Sbjct:    1 MKIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQK 35          
BLAST of EY679633 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.448e-11
Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 2
Query:  209 CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISQAITSKGGHFLEAPVSGSKRPAETG 493
            C E    G  V  SPAEV +K    I ML     A+ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G
Sbjct:   74 CKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSG 168          

HSP 2 Score: 32.3426 bits (72), Expect = 1.448e-11
Identity = 12/31 (38.71%), Postives = 23/31 (74.19%), Query Frame = 1
Query:   97 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWN 189
            K  VGF+GLG MG  ++ NL+++G+ + +++
Sbjct:   38 KTPVGFIGLGNMGNPMAKNLMKHGYPLILYD 68          
BLAST of EY679633 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 5.340e-11
Identity = 31/95 (32.63%), Postives = 48/95 (50.53%), Query Frame = 2
Query:  209 CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISQAITSKGGHFLEAPVSGSKRPAETG 493
            C E    G  V  SPA+V +K    I ML     ++ V     G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G
Sbjct:   74 CKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSG 168          

HSP 2 Score: 32.3426 bits (72), Expect = 5.340e-11
Identity = 12/31 (38.71%), Postives = 23/31 (74.19%), Query Frame = 1
Query:   97 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWN 189
            K  VGF+GLG MG  ++ NL+++G+ + +++
Sbjct:   38 KTPVGFIGLGNMGNPMAKNLIKHGYPLILYD 68          
The following BLAST results are available for this feature:
BLAST of EY679633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GLYR1_DROPS8.429e-1736.46Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
GLYR1_DROME5.284e-1633.33Putative oxidoreductase GLYR1 homolog OS=Drosophil... [more]
YFJR_BACSU4.877e-1333.93Uncharacterized oxidoreductase yfjR OS=Bacillus su... [more]
3HIDH_MOUSE1.448e-1134.743-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_RAT5.340e-1132.633-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-D01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679633 ID=EY679633; Name=EY679633; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGGGACTCTGCTGAGAGTGGGAAGTAAGTAGATCTGAAAAG
CGGAAAAAATTTAGAATACAGAGGAGGAAGATATTGAAGAAACAAGAAAA
TGGAAGTGGGGTTTCTGGGTTTAGGAATTATGGGCAAGGCCATTTCTATG
AACTTGCTTAGAAATGGATTCAAAGTTACTGTATGGAACAGGACTCTCTC
TAAGGTAGTGTGATGAACTCGTGGCACACGGTGCTACAGTTGGAGGAAGT
CCAGCAGAAGTGATTAAAAAGTGTACGATTACTATTGGGATGCTAGCTGA
TCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAAGGTGGTGTTTTGGAGC
AAATTTGTCCTGGGAAAGGTTACATTGACATGTCAACAGTTGATCATGAA
ACTTCAATAAAGATCAGCCAGGCAATTACATCAAAAGGCGGTCACTTCCT
TGAAGCTCCAGTTTCAGGTAGCAAGCGCCCTGCAGAAACTGGTCAAACTA
GTAATCCTTTCTGCTGGGGAGAAATATGATAAATACCTTTTTCTGAAGGA
GTTGTACTGGCTCAAAAAAATGGGACCTGACACCTCGCACTTTTCTTGAA
GTTCCTGGACCTAGGGGGGGATTGCTAATCCATATTTTCCAGGCGAAACG
GGCCCAGAAACCCACCAAAACCGTCAAGCCCCCTGCCTTTTCCTCTTTCC
CCGCCAACCCGAAGAGCGTTGGGGGTGGGCACCGGGCCCTGGTCGGAGGA
AAGCTAGAGAAGCGAGGGCGTAGTTCGAGGGATTAGGACGGGGCGGCCTT
CAGCCAAGCCGGAAGGCCAGCGGCGTGACGACCCAGCACACACACCGCTC
CGGGCTATAGGAGCGCCGGCACAGCGCGGAAGGAGAACACACACGGAAAC
ACCACCCCACACCACCCAGACAGCGCACACCACCACCCCCCCCCGACGAA
CCAATGAAACCAGCGCAGTAGAAGAACAGAGACATCCACAACAGCCGAAG
AACGGTTCAG
back to top