EY679620

Overview
NameEY679620
Unique NameEY679620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.226e-29
Identity = 78/241 (32.37%), Postives = 116/241 (48.13%), Query Frame = 1
Query:   22 MKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIYALXXXXXXXXXXXXXKSSLMPQIKFEKKFGQSPVFIASTL----KEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFT*QALSDMVWIWGVD*KPLERFSYIN 732
            M  L+G+QGP Y+GTG +FRR ALYG +      PPR                                                     +S +  +    KFG S  F+ + L    +E    P      S+  +   + +C YED T WG+++GW+Y   TED++TGF+MH  GWRSVY   +  AF+G+APINL++RL+Q+LRW+ GS+E+F   + + +    G    PL+R +Y+N
Sbjct:  440 MLSLNGLQGPSYLGTGTMFRRVALYGVE------PPRWGAA-------------------------------------------------ASQIKAMDIANKFGSSTSFVGTMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLA---GRRLHPLQRVAYLN 622          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.197e-28
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  325 KFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIF 654
            KFG+S  F+AS   E             + EA  ++SC YED T WG+++GW+YG+VTED+ TGF MH  GWRS Y      AF+G+APINL+DRLHQVLRWA GS+EIF
Sbjct:  473 KFGESAPFLASVRAEQSH---SRDDGDAIAEASALVSCAYEDGTAWGRDVGWVYGTVTEDVATGFCMHRRGWRSAYYAAAPDAFRGTAPINLADRLHQVLRWAAGSLEIF 579          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.034e-26
Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 1
Query:  322 KKFGQSPVFIAS----TLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFT*QALSDMVWIWGVD*KPLERFSYINSVG 741
            KKFG    FI+S      +E   +   A   S+L E    ++C YED TDWGK++GW+Y   TED++TGF++H  GWRS+YC  +  AF+G+APINL++RL+Q+LRW+ GS+E+F      +   + G     ++R +YIN  G
Sbjct:  513 KKFGNLDSFISSIPIAANQERSIISPPALEESILQELSDAMACAYEDGTDWGKDVGWVYNIATEDVVTGFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMF---FSHNCPLLAGRRLNFMQRIAYINMTG 653          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26
Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 1
Query:  325 KFGQSPVFIASTLKEAG----GVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFT*QALSDMVWIWGVD*KPLERFSYINSVGLSQNIHSLDSKIVPCLAIGPLYWEI 816
            KFG S + + S L+         P+  +    +NE   V+S  ++ +TDWGK +G+IY   TEDI+TGF++H  GWRS+YC  +  AF G+APINL++RLHQ++RW+ GS+E+F      +   I G   +PL+R SY+N       I+ + S  +   AI P+ W I
Sbjct:  511 KFGNSILLLESVLEALNQDRFATPSPVNDI-FVNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMF---FSHNNPLIGGRRLQPLQRVSYLN-----MTIYPVTSLFILLYAISPVMWLI 669          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26
Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 1
Query:  325 KFGQSPVFIASTLKEAG----GVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFT*QALSDMVWIWGVD*KPLERFSYINSVGLSQNIHSLDSKIVPCLAIGPLYWEI 816
            KFG S + + S L+         P+  +    +NE   V+S  ++ +TDWGK +G+IY   TEDI+TGF++H  GWRS+YC  +  AF G+APINL++RLHQ++RW+ GS+E+F      +   I G   +PL+R SY+N       I+ + S  +   AI P+ W I
Sbjct:  511 KFGNSILLLESVLEALNQDRFATPSPVNDI-FVNELEMVVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMF---FSHNNPLIGGRRLQPLQRVSYLN-----MTIYPVTSLFILLYAISPVMWLI 669          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.651e-24
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:  325 KFGQSPVFIASTL----KEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFT*QALSDMVWIWGVD*KPLERFSYIN 732
            KFG S   ++S L    +E    P  A   S+  +   V +CGY+  T WG++ GW+Y   TED+ TGF+MH  GWRSVY   +  AF+G+APINL++RL+Q+LRW+ GS+E+F   + + +    G    PL+R +Y+N
Sbjct:  525 KFGASSTLVSSMLDGANQERSITPPVAIDGSVARDLAAVTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLA---GRRLHPLQRIAYLN 661          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.815e-24
Identity = 56/143 (39.16%), Postives = 90/143 (62.94%), Query Frame = 1
Query:  325 KFGQSPVFI-----ASTLKEAGGVPTGAST--ASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFT*QALSDMVWIWGVD*KPLERFSYIN 732
            ++G S  FI     A++ + +   P  AS    + + E   V++C YED T+WG  +GW+Y   TED++TGF++H  GWRS+YC  +  AF+G+APINL++RL+Q+LRW+ GS+E+F      +   + G   +P++R +Y N
Sbjct:  499 RYGNSMPFINTIPAAASQERSIASPAAASLDETAAMAEVEEVMTCAYEDGTEWGDGVGWVYDIATEDVVTGFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMF---FSRNCPLLAGCRLRPMQRVAYAN 638          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.057e-23
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  319 EKKFGQSPVFIASTLKEAG-------GVP--TGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 651
            E+ FGQSP FIAS  +E G       G P  T A   SLL EAIHV+SC +E++T WGKEIGW+YG     + TGF+MH  GW S YC P RPAF+  A  + +D L    R A+ ++ I
Sbjct:  481 ERHFGQSPAFIASAFEEQGRRRGGDGGSPDATVAPARSLLKEAIHVVSCAFEERTRWGKEIGWMYGG---GVATGFRMHARGWSSAYCSPARPAFRRYARASPADVLAGASRRAVAAMGI 597          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.717e-18
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  418 AIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 651
            A  V  C YE  T+WG +IG+ YGS+ ED  TG+++HC GWRSV+C PKR AF G +P +L D + Q  RWA+G +E+
Sbjct:  438 AHRVAGCIYELNTNWGSKIGFRYGSLVEDYYTGYRLHCEGWRSVFCRPKRAAFCGDSPKSLIDVVSQQKRWAIGLLEV 515          
BLAST of EY679620 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.146e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  406 LLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 651
            +L+ A +V  C YE  T+WG +IG+ YGS+ ED  TGF +HC GWRSV+C PK+ AF G +P  L D + Q +RWA+G  E+
Sbjct:  415 VLSLAHNVAGCIYEYNTNWGSKIGFRYGSLVEDYYTGFMLHCEGWRSVFCNPKKAAFYGDSPKCLVDLVGQQIRWAVGLFEM 496          
The following BLAST results are available for this feature:
BLAST of EY679620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF1_ORYSJ2.226e-2932.37Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF7_ORYSJ4.197e-2853.64Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF8_ORYSJ1.034e-2642.36Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF3_ORYSJ6.701e-2639.29Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI6.701e-2639.29Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF4_ORYSJ1.651e-2441.43Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF9_ORYSJ2.815e-2439.16Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CESAB_ORYSJ9.057e-2348.33Putative cellulose synthase A catalytic subunit 11... [more]
CSLG3_ARATH6.717e-1851.28Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG1_ARATH1.146e-1750.00Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-B12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679620 ID=EY679620; Name=EY679620; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGGTAGATAAACATGAAAGGATTGGACGGGATCCAGGGTCC
CATTTATGTTGGAACTGGGTGCGTCTTCAGGAGGCAGGCACTCTATGGAT
ACGATGCTCCCGTCAAGAAGAAACCTCCAAGGAAGACCTGTAACTGTTTG
CCAAAATGGTGTTGCTGTTGTTGCAGATCTAGAAAGAAGAGTAAGAAAGG
GAAGTCAAATAAGAAGAACAAGGACACTTCCAAGCAGATATATGCACTAG
AAAATATCGAGGAGGGAATTGAAGGTATAGATAATGAGAAATCATCCCTG
ATGCCCCAAATAAAATTTGAGAAAAAGTTTGGACAATCACCAGTTTTCAT
TGCGTCTACTTTGAAGGAAGCCGGTGGAGTTCCAACAGGAGCTTCAACCG
CATCACTCTTGAACGAAGCAATCCACGTTATCAGCTGCGGCTATGAGGAT
AAAACTGATTGGGGTAAAGAGATTGGATGGATTTATGGATCTGTTACAGA
GGATATATTAACAGGCTTTAAAATGCATTGCCATGGTTGGCGATCTGTGT
ATTGCATACCAAAAAGGCCAGCTTTCAAGGGTTCGGCTCCTATAAACCTC
TCAGATCGTCTACACCAGGTTCTTCGTTGGGCACTAGGATCTGTTGAGAT
TTTTACTTAACAGGCATTGTCCGATATGGTATGGATATGGGGTGTGGATT
GAAAACCACTGGAGCGCTTCTCGTATATAAACTCCGTTGGTTTATCCCAA
AACATCCATTCCCTTGATTCCAAAATTGTACCTTGCCTGGCTATCGGCCC
CCTTTACTGGGAAATTTCATTGTTCCCTGAAAATAACCAACCTATGCCCA
TTAATCCTTTTTCGGGGCCCTTTTTCTATACCTTAAGCTGCCACAGGGGA
TTTTTTTGAAAAGGGAAAGGGGGGGAGGGTTGTGGGCGTAA
back to top