EY679609

Overview
NameEY679609
Unique NameEY679609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.048e-31
Identity = 68/140 (48.57%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T +PA  VP MG+RQ MNLL  G+V+      L P A +F PP     GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    +   +        LGCVVPWNS   +F  PC G QY+  G VVR
Sbjct:    2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIG-SYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 5.048e-31
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 2
Query:  158 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            VPD+G+RQ MNLL  G ++      L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A  +        LGCVVPWN+ + +F  PC G QYN  G VVR
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIA-NYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVR 141          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.918e-30
Identity = 67/140 (47.86%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + +  VP MG+RQ MNLL  G+V+      L P A +F PP    +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  +   +        LGCVVPWNS   +F  PC G QY+  G VVR
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIG-SYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.505e-30
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  +   +        LGCVVPWNS   +F  PC G QYN  G VVR
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIG-SYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.505e-30
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  +   +        LGCVVPWNS   +F  PC G QYN  G VVR
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIG-SYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.272e-30
Identity = 68/140 (48.57%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T I A  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GND+ A+ WL  H  GDR+L +GLKGDPTYL+V+   ++   +        LGCVVPWN+   +F  PC G QY+  G VVR
Sbjct:    2 TQISAKDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPKASGAGGGTTAKDELGNDVTASGWLADHKEGDRSLVQGLKGDPTYLIVDGPDSIG-DYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.272e-30
Identity = 66/136 (48.53%), Postives = 84/136 (61.76%), Query Frame = 2
Query:  149 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +   +        LGCVVPWN+ + +F  PC G QY+  G VVR
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIG-DYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVR 141          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.272e-30
Identity = 66/136 (48.53%), Postives = 84/136 (61.76%), Query Frame = 2
Query:  149 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +   +        LGCVVPWN+ + +F  PC G QY+  G VVR
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIG-DYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVR 141          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPX (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH8102) GN=petC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.274e-30
Identity = 68/140 (48.57%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GN I A  WL++H  GDR+L +GLKGDPTYL+VE    +   +        LGCVVPWNS   +F  PC G QY+  G VVR
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGAGGGTTAKDELGNAITATGWLSSHPEGDRSLVQGLKGDPTYLIVEGPDAIG-SYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.290e-30
Identity = 69/134 (51.49%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  158 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALT-LGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L     GDR L +GLKGDPTY+VVE  +  AIK   + +  T LGCVVPWN  + +F  PC G QY++ G VVR
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKFLENRNAGDRALVQGLKGDPTYIVVENKQ--AIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVR 141          
The following BLAST results are available for this feature:
BLAST of EY679609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
UCRI_SYNS35.048e-3148.57Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIB_SYNY35.048e-3148.87Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_SYNSC1.918e-3047.86Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMM2.505e-3047.86Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM32.505e-3047.86Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNR33.272e-3048.57Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNP63.272e-3048.53Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE73.272e-3048.53Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNPX4.274e-3048.57Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP7.290e-3051.49Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-B01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679609 ID=EY679609; Name=EY679609; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGCTCCTTCTCAGCTATGCTCACGCAAGGGTGGTATGTTCT
GTCCATCAAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACA
AAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGC
TGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCT
TGGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACC
TTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAA
GGATGCCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACG
GCCCTGGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCCACCTAC
CTTGTTGTGGAACAAGACAAAACACTTGCCATCAAATGGAAATCAATGCT
GTCTGCACTCACCTTGGGATGTGTGGTGCCATGGAATTCCCCCAAAAAAA
GATTCAACTAACCCTGCACCGGATGCCAATACAATAAACATGGAACAGTT
GTGAGAAGGAACTGCACAATGTGACATGCGGATAGGACCATGACACACTC
TGAAATGAGTAAGGCAACTCACCATACACTAGACGGCAAACAATTACAGG
AATGCGAGAACCCCCAAGGCGGCGCAGAAACCCGGACACAGGGGCCTGGG
AAGAACGACAGACAAAAGACCGACCGCCGACAAGGAAAAATCAAAGCCGG
GCGGGAAAAAGAAAAAGGACGAGAGCAGCAAACACGGACAAGCATAACCC
AGATAATGAAGGCATCGATGAGCCACCGAAGCTCCACAGAAGAAAACCAC
CACCAACAGGACNCGAAAGAAACGACAAATAATACGAACTCATAAAGAGA
CGGGCAAGA
back to top