EY679609

Overview
NameEY679609
Unique NameEY679609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.911e-28
Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALT--LGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +    +  L+A+   LGCVVPW+S   +F  PC G QY+ +G VVR
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIG---EFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.164e-27
Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALT--LGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +    +  L+A+   LGCVVPW+S   +F  PC G QY+ +G VVR
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIG---EFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.520e-27
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALT--LGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + +  VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +    +  L+A+   LGCVVPW+S   +F  PC G QY+ +G VVR
Sbjct:    2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIG---EFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.985e-27
Identity = 64/142 (45.07%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALT--LGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +    +  L+A+   LGCVVPW+S   +F  PC G QY+ +G VVR
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIG---EFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.593e-27
Identity = 64/142 (45.07%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  137 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALT--LGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +    +  L+A+   LGCVVPW+S   +F  PC G QY+ +G VVR
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIG---EFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.867e-26
Identity = 68/179 (37.99%), Postives = 88/179 (49.16%), Query Frame = 2
Query:   20 QLCSRKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            QL + +G +  P  +F    +R           K   QA     D VPDMGKR+LMN L+L AV+         Y  +F PP  G  GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D +    +        LGCVVPW++   +F  PC G QY   G VVR
Sbjct:   36 QLSAVRGKIAAPRTSFQNAVSRVSRNQLPSSSRKAVAQAFLSNPDMVPDMGKRKLMNNLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVR 214          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.595e-22
Identity = 55/132 (41.67%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  161 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            P M +R L+N LL G+V +     L P   +F PP  G  G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V+  D      +        LGCVVPWN  +  F  PC G QY  +G V+R
Sbjct:   11 PPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVI--DNGAVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.246e-21
Identity = 54/132 (40.91%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  161 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            P M +R  +N LL  +V +     L P   +F PP  G AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V+  D      +        LGCVVPWN+ +  F  PC G QY  +G V+R
Sbjct:   11 PPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVI--DNGAVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.901e-18
Identity = 54/133 (40.60%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  161 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG-LGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            P   +RQL+N L    V++           FF PP   G AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L      + S   LGC  PWN   + F  PC G +Y+  G+V R
Sbjct:   10 PSYSRRQLLNFLAGTTVAVTASAGAYAMGKFFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLD-SIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVAR 140          
BLAST of EY679609 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.077e-17
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  149 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEQDKTLAIKWKSMLSALTLGCVVPWNSPKKRFN*PCTGCQYNKHGTVVR 556
            A  +P M +RQL++ +  GA++  T   L P   +F PP     G G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A  +        LGCVVPW++  K+F  PC G  YN  G + R
Sbjct:    6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIA-NFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLER 142          
The following BLAST results are available for this feature:
BLAST of EY679609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
UCRI_PROM98.911e-2845.77Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM01.164e-2746.48Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM21.520e-2746.48Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP1.985e-2745.07Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM52.593e-2745.07Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA2.867e-2637.99Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJB5.595e-2241.67Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJA1.246e-2140.91Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_SYNY34.901e-1840.60Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]
UCRI_GLOVI7.077e-1737.41Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-B01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679609 ID=EY679609; Name=EY679609; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGCTCCTTCTCAGCTATGCTCACGCAAGGGTGGTATGTTCT
GTCCATCAAGAGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACA
AAGAATCCAATGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGC
TGATAGAGTGCCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCT
TGGGTGCTGTTTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACC
TTCTTTGCCCCACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAA
GGATGCCATTGGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACG
GCCCTGGGGACCGAACCCTCACCGAAGGATTGAAGGGAGATCCCACCTAC
CTTGTTGTGGAACAAGACAAAACACTTGCCATCAAATGGAAATCAATGCT
GTCTGCACTCACCTTGGGATGTGTGGTGCCATGGAATTCCCCCAAAAAAA
GATTCAACTAACCCTGCACCGGATGCCAATACAATAAACATGGAACAGTT
GTGAGAAGGAACTGCACAATGTGACATGCGGATAGGACCATGACACACTC
TGAAATGAGTAAGGCAACTCACCATACACTAGACGGCAAACAATTACAGG
AATGCGAGAACCCCCAAGGCGGCGCAGAAACCCGGACACAGGGGCCTGGG
AAGAACGACAGACAAAAGACCGACCGCCGACAAGGAAAAATCAAAGCCGG
GCGGGAAAAAGAAAAAGGACGAGAGCAGCAAACACGGACAAGCATAACCC
AGATAATGAAGGCATCGATGAGCCACCGAAGCTCCACAGAAGAAAACCAC
CACCAACAGGACNCGAAAGAAACGACAAATAATACGAACTCATAAAGAGA
CGGGCAAGA
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