EY679606

Overview
NameEY679606
Unique NameEY679606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 1.112e-92
Identity = 175/217 (80.65%), Postives = 184/217 (84.79%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR+     W      E    K     + P   EQP+MT+EKLLE
Sbjct:  188 INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRK-----WVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLE 399          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 337.421 bits (864), Expect = 7.207e-92
Identity = 172/217 (79.26%), Postives = 184/217 (84.79%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            I PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR      W  +   E    K       P   EQP++T+EKLLE
Sbjct:  180 ITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRR-----WVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLE 391          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 3.577e-91
Identity = 169/213 (79.34%), Postives = 183/213 (85.92%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELKGNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR+           ++    K   P   +QP+M+L+KLL+
Sbjct:  186 INPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTF-DQPKMSLDKLLQ 397          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.503e-89
Identity = 168/212 (79.25%), Postives = 181/212 (85.38%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELKGNTPQHSEQPRMTLEKLL 637
            INPIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR+           ++    K   P   +QP+MTL+KLL
Sbjct:  188 INPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTF-DQPKMTLDKLL 398          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 1.077e-87
Identity = 178/279 (63.80%), Postives = 202/279 (72.40%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELKGNTPQHSEQPRMTLEKLLELRKHDLCRTKKM*KKFIWVTVI*VGPLLVKQCRFLSKWEIFFGKPPPQMNFPISLKGVPVPHAKKF 838
            INPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR+           ++    K   P   EQP MTL+KL+E   + L + ++  K+            L    +       FFGK   Q++ P++ +G   P AK +
Sbjct:  182 INPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVF-EQPEMTLQKLMEY-GNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVA-QGCTDPEAKNY 457          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 2.175e-80
Identity = 146/176 (82.95%), Postives = 157/176 (89.20%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRE 529
            I PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+
Sbjct:  157 IAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQ 332          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.084e-63
Identity = 117/173 (67.63%), Postives = 143/173 (82.66%), Query Frame = 2
Query:   14 MMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRE 529
            ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R+
Sbjct:   60 LISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRD 232          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.850e-63
Identity = 119/177 (67.23%), Postives = 143/177 (80.79%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRE 529
            I   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R+
Sbjct:   56 IEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRD 232          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.211e-24
Identity = 79/166 (47.59%), Postives = 79/166 (47.59%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 499
            INPIMMSAGELESGNAGEPAK                 MCCL INDLDAGAGR                                         VPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   60 INPIMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGR-----------------------------------------VPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
The following BLAST results are available for this feature:
BLAST of EY679606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_TOBAC1.112e-9280.65Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE7.207e-9279.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU3.577e-9179.34Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.503e-8979.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.077e-8763.80Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.175e-8082.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.084e-6367.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.850e-6367.23Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.211e-2447.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-A10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679606 ID=EY679606; Name=EY679606; organism=Citrus sinensis; type=EST; length=957bp
CATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTG
GAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATT
ATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGG
AGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAATGG
TTAACGCCACACTCATGAACATTGCTGATAACCCAACTTGTGTCCAACTC
CCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATCATAGTCAC
CGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTA
TGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGC
AAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCT
TGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGG
CCAGAGTCTATGATGATGAGGTGAGGGAATTGGATCTCTGGTATTGGTGT
TGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAACACCCCCCAACA
TTCCGAGCAACCAAGGATGACATTGGAAAAGCTGCTCGAGTTACGAAAAC
ATGATTTGTGCAGAACAAAGAAAATGTGAAAAAAATTCATTTGGGTGACA
GTTATTTGAGTGGGGCCCCTCTTGGTGAAGCAATGCAGATTCCTATCCAA
ATGGGAAATTTTCTTTGGCAAACCACCCCCACAAATGAATTTTCCCATTT
CCCTGAAAGGAGTACCGGTTCCTCATGCCAAAAAATTTTTATCCCACCTG
GCAAAAATGGAGGTAGGAAACCCGCCCAAAACCCCCCTTTTGGGCCTTTT
TTTTCAAAGGGGTGAAAAAAAGTTGCCACCCTTTTTGCTCTTAAAAAAGT
GTAGAAA
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