EY679594 | Citrus Genome Database

Overview


Name	EY679594
Unique Name	EY679594
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	896

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ECO5E (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.211e-13
Identity = 46/160 (28.75%), Postives = 69/160 (43.12%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 31.5722 bits (70), Expect = 1.211e-13
Identity = 16/60 (26.67%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      G+ GV  +L ++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAFLYALATAGQAGVANLLNLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ECO57 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 GN=lldD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.211e-13
Identity = 46/160 (28.75%), Postives = 69/160 (43.12%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 31.5722 bits (70), Expect = 1.211e-13
Identity = 16/60 (26.67%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      G+ GV  +L ++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAFLYALATAGQAGVANLLNLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ECO55 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain 55989 / EAEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.211e-13
Identity = 46/160 (28.75%), Postives = 69/160 (43.12%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 31.5722 bits (70), Expect = 1.211e-13
Identity = 16/60 (26.67%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      G+ GV  +L ++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAFLYALATAGQAGVANLLNLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ECO27 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.211e-13
Identity = 46/160 (28.75%), Postives = 69/160 (43.12%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 31.5722 bits (70), Expect = 1.211e-13
Identity = 16/60 (26.67%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      G+ GV  +L ++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAFLYALATAGQAGVANLLNLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ECO24 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.211e-13
Identity = 46/160 (28.75%), Postives = 69/160 (43.12%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     +  Q +                DLG +       +GL  Y+       D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 31.5722 bits (70), Expect = 1.211e-13
Identity = 16/60 (26.67%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      G+ GV  +L ++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAFLYALATAGQAGVANLLNLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.212e-13
Identity = 46/160 (28.75%), Postives = 70/160 (43.75%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  +       + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGANAAMRRYWQAVTHPQWAWDVGVNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 32.7278 bits (73), Expect = 1.212e-13
Identity = 16/60 (26.67%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      G+ GV  +L ++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADSVLL-GRAYLYALATHGQAGVANLLNLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.029e-11
Identity = 44/160 (27.50%), Postives = 73/160 (45.62%), Query Frame = 3

Query:   15 LSFCIRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD---------------EANDSGLAAYVAGQIDRSLS--WKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRI 443
            +S   RA++ G + + +T+DT  LG R +D+ N +   PFL   +  G++ G  D               E N    A   AG +   +S  W+D+K+L+     PI++KG++   D              SNHG RQ D   A++  L ++V A   ++
Sbjct:  171 ISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDNGYD--PFLNPDSI-GVEHGFSDPVFRKQFKEKHGVEVEENMLEAAKEFAGIVFPGISHDWEDLKFLRKHWDGPIVLKGIMNVPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVDAVGDKL 327

HSP 2 Score: 39.6614 bits (91), Expect = 1.029e-11
Identity = 24/54 (44.44%), Postives = 29/54 (53.70%), Query Frame = 1

Query:  448 VFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            V  D GVR G D+ KALALGA  + I     V    LEG  GV  V+  L G++
Sbjct:  329 VLFDSGVRSGADIAKALALGAKMVLIGRPY-VYGLALEGSSGVSHVIRCLLGDL 381

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ACTPJ (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lldD PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.339e-11
Identity = 42/160 (26.25%), Postives = 67/160 (41.88%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--------FQGLDLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRI 443
            RA+ AG   +  TVD P  G R  D  +  +   +  ++         F   D+G   + +  G  +   G+               D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD   ++  AL  +  A +G I
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDRHSGMS-GDYKEIRRALQAVTHPFWAWDVGIKGKPHTLGNVSAYTGKAVGLDDYVVWLGENFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDI 301

HSP 2 Score: 34.2686 bits (77), Expect = 1.339e-11
Identity = 18/60 (30.00%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G D+ + LALGA    +   + V      GK GV  +L++ + E+
Sbjct:  297 VKGDIKILADSGIRNGLDIVRMLALGADATML-GRAFVYALGAAGKAGVENMLDIFKKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP7 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lldD PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.339e-11
Identity = 42/160 (26.25%), Postives = 67/160 (41.88%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--------FQGLDLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRI 443
            RA+ AG   +  TVD P  G R  D  +  +   +  ++         F   D+G   + +  G  +   G+               D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD   ++  AL  +  A +G I
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDRHSGMS-GDYKEIRRALQAVTHPFWAWDVGIKGKPHTLGNVSAYTGKAVGLDDYVVWLGENFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDI 301

HSP 2 Score: 34.2686 bits (77), Expect = 1.339e-11
Identity = 18/60 (30.00%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G D+ + LALGA    +   + V      GK GV  +L++ + E+
Sbjct:  297 VKGDIKILADSGIRNGLDIVRMLALGADATML-GRAFVYALGAAGKAGVENMLDIFKKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP2 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lldD PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.339e-11
Identity = 42/160 (26.25%), Postives = 67/160 (41.88%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN--------FQGLDLGKMDEANDSGLAAYVAGQ--------------IDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRI 443
            RA+ AG   +  TVD P  G R  D  +  +   +  ++         F   D+G   + +  G  +   G+               D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD   ++  AL  +  A +G I
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDRHSGMS-GDYKEIRRALQAVTHPFWAWDVGIKGKPHTLGNVSAYTGKAVGLDDYVVWLGENFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGALSSARALPSIADAVKGDI 301

HSP 2 Score: 34.2686 bits (77), Expect = 1.339e-11
Identity = 18/60 (30.00%), Postives = 31/60 (51.67%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G D+ + LALGA    +   + V      GK GV  +L++ + E+
Sbjct:  297 VKGDIKILADSGIRNGLDIVRMLALGADATML-GRAFVYALGAAGKAGVENMLDIFKKEM 355

The following BLAST results are available for this feature:

BLAST of EY679594 vs. ExPASy Swiss-Prot

BLAST of EY679594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121


Match Name	E-value	Identity	Description
LLDD_ECO5E	1.211e-13	28.75	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECO57	1.211e-13	28.75	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECO55	1.211e-13	28.75	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECO27	1.211e-13	28.75	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECO24	1.211e-13	28.75	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ENT38	1.212e-13	28.75	L-lactate dehydrogenase [cytochrome] OS=Enterobact...	[more]
YKN3_SCHPO	1.029e-11	27.50	Uncharacterized lactate 2-monooxygenase PB1A11.03 ...	[more]
LLDD_ACTPJ	1.339e-11	26.25	L-lactate dehydrogenase [cytochrome] OS=Actinobaci...	[more]
LLDD_ACTP7	1.339e-11	26.25	L-lactate dehydrogenase [cytochrome] OS=Actinobaci...	[more]
LLDD_ACTP2	1.339e-11	26.25	L-lactate dehydrogenase [cytochrome] OS=Actinobaci...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-052-H09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679594 ID=EY679594; Name=EY679594; organism=Citrus sinensis; type=EST; length=896bp
CAGGAATGTGGTTGCTCAGCTTCTGTATAAGGGCTGAAAGAGCCGGATTC
AAGGCCATTGCTCTAACAGTTGATACCCCGAGGCTGGGTCGCAGAGAAGC
TGACATCAAGAACAGATTCACTCTACCACCATTTTTGACATTAAAGAATT
TTCAGGGTTTGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTT
GCTGCCTATGTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAAGGACGT
GAAGTGGCTTCAAACAATCACCAAATTGCCAATTCTGGTGAAGGGTGTAC
TCACAGCAGAGGATGCGCGGATTGCAGTTCAAGCTGGAGCAGCTGGGATT
ATTGTATCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCCACTAT
CATGGCCCTGGAAGAGGTTGTGAAAGCTACTCAGGGGCGTATTTCCTGTG
TTCTTGGATGGTGGTGTTAGGCGAGGAACTGATGTCTTCAAAGCATTGGC
ACTTGGAGCCTCTGGTATATTTATTTGGACGACCAGTGGTGTACTCATTT
GGCAGCTGGAGGGAAAGAAAGGGGTTAGAAGAGTACTCGAGATGCTGCGT
GGAGAAATTTTGAACTACCAATGGCACTAATGGGTTGCCGCTCACTCAAA
AAGAATTTACTCGGGATCACATCGTCCCTGAAAGGGGAAGCTTCCTCTCC
CTCCCCCCGGTTCCCAGGGTAAAAGTTCCCTGGCAGGGCAAATAAAAAAA
AAAAAACAAAAAATTTTGGGTTAACTTTTTTTTTAATTTCTTTTTTTTGG
GAAAAATTTGGTTTAGGGGTTTAATTGGGGTCCTGAAATTATTTTTTAAA
CCTTCCGGGTAAAAGAAGAAAATAAGGGGGCACCCTTCTGGCCCCC