EY679594

Overview
NameEY679594
Unique NameEY679594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 2.921e-11
Identity = 41/148 (27.70%), Postives = 64/148 (43.24%), Query Frame = 3 
Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF----------------QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVK 425
            R   AGF  + +TVD P  G R  D++N  ++PP LTL+                  + L    +D    + +  Y+    D SL++ D+ W+++     ++VKG+ T +D              SNHG RQLD  P     L  V +
Sbjct:  175 RVAAAGFDTMLVTVDVPVAGARLRDVRNGMSIPPALTLRTVLDAMGHPRWWFDLLTTEPLAFASLDRWPGT-VGEYLNTVFDPSLTFDDLAWIKSQWPGKLVVKGIQTLDDARAVVDRGVDGIVLSNHGGRQLDRAPVPFHLLPHVAR 321

HSP 2 Score: 27.7202 bits (60), Expect = 2.921e-11
Identity = 16/55 (29.09%), Postives = 29/55 (52.73%), Query Frame = 1 
Query:  448 VFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEIL 612
            + +D G+  G D+  A+ALGA    I   + +      G+ GV R +E+L+  ++
Sbjct:  329 ILVDTGIMSGADIVAAIALGARCTLI-GRAYLYGLMAGGEAGVNRAIEILQTGVI 382
The following BLAST results are available for this feature:
BLAST of EY679594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
LLDD2_MYCTU2.921e-1127.70Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-H09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679594 ID=EY679594; Name=EY679594; organism=Citrus sinensis; type=EST; length=896bp
CAGGAATGTGGTTGCTCAGCTTCTGTATAAGGGCTGAAAGAGCCGGATTC
AAGGCCATTGCTCTAACAGTTGATACCCCGAGGCTGGGTCGCAGAGAAGC
TGACATCAAGAACAGATTCACTCTACCACCATTTTTGACATTAAAGAATT
TTCAGGGTTTGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTT
GCTGCCTATGTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAAGGACGT
GAAGTGGCTTCAAACAATCACCAAATTGCCAATTCTGGTGAAGGGTGTAC
TCACAGCAGAGGATGCGCGGATTGCAGTTCAAGCTGGAGCAGCTGGGATT
ATTGTATCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCCACTAT
CATGGCCCTGGAAGAGGTTGTGAAAGCTACTCAGGGGCGTATTTCCTGTG
TTCTTGGATGGTGGTGTTAGGCGAGGAACTGATGTCTTCAAAGCATTGGC
ACTTGGAGCCTCTGGTATATTTATTTGGACGACCAGTGGTGTACTCATTT
GGCAGCTGGAGGGAAAGAAAGGGGTTAGAAGAGTACTCGAGATGCTGCGT
GGAGAAATTTTGAACTACCAATGGCACTAATGGGTTGCCGCTCACTCAAA
AAGAATTTACTCGGGATCACATCGTCCCTGAAAGGGGAAGCTTCCTCTCC
CTCCCCCCGGTTCCCAGGGTAAAAGTTCCCTGGCAGGGCAAATAAAAAAA
AAAAAACAAAAAATTTTGGGTTAACTTTTTTTTTAATTTCTTTTTTTTGG
GAAAAATTTGGTTTAGGGGTTTAATTGGGGTCCTGAAATTATTTTTTAAA
CCTTCCGGGTAAAAGAAGAAAATAAGGGGGCACCCTTCTGGCCCCC
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