EY679594 | Citrus Genome Database

Overview


Name	EY679594
Unique Name	EY679594
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	896

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALPB (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALHS (L-lactate dehydrogenase [cytochrome] OS=Salmonella heidelberg (strain SL476) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALG2 (L-lactate dehydrogenase [cytochrome] OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALEP (L-lactate dehydrogenase [cytochrome] OS=Salmonella enteritidis PT4 (strain P125109) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALDC (L-lactate dehydrogenase [cytochrome] OS=Salmonella dublin (strain CT_02021853) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALAR (L-lactate dehydrogenase [cytochrome] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALA4 (L-lactate dehydrogenase [cytochrome] OS=Salmonella agona (strain SL483) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.806e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.8834 bits (76), Expect = 6.806e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLIEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALPK (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A (strain AKU_12601) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.843e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.4982 bits (75), Expect = 8.843e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLVEKEM 355

BLAST of EY679594 vs. ExPASy Swiss-Prot
Match: LLDD_SALPA (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.843e-15
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 3

Query:   30 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL----------------DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDXXXXXXXXXXXXXXSNHGARQLDYVPATIMALEEVVKATQGRIS 446
            RA+ AG   +  TVD P  G R  D  +  + P     + +Q +                DLG +       +GL  Y+   A   D S+SWKD++W++     P+++KG+L  ED              SNHG RQLD V ++  AL  +  A +G I+
Sbjct:  143 RAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIA 302

HSP 2 Score: 33.4982 bits (75), Expect = 8.843e-15
Identity = 17/60 (28.33%), Postives = 32/60 (53.33%), Query Frame = 1

Query:  430 LRGVFPVFLDGGVRRGTDVFKALALGASGIFIWTTSGVLIWQLEGKKGVRRVLEMLRGEI 609
            ++G   +  D G+R G DV + +ALGA  + +   + +      GK GV  +L+++  E+
Sbjct:  297 VKGDIAILADSGIRNGLDVVRMIALGADTVLL-GRAYLYALATAGKAGVANLLDLVEKEM 355

The following BLAST results are available for this feature:

BLAST of EY679594 vs. ExPASy Swiss-Prot

BLAST of EY679594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121


Match Name	E-value	Identity	Description
LLDD_SALPB	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALNS	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALHS	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALG2	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALEP	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALDC	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALAR	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALA4	6.806e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALPK	8.843e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALPA	8.843e-15	29.38	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-052-H09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679594 ID=EY679594; Name=EY679594; organism=Citrus sinensis; type=EST; length=896bp
CAGGAATGTGGTTGCTCAGCTTCTGTATAAGGGCTGAAAGAGCCGGATTC
AAGGCCATTGCTCTAACAGTTGATACCCCGAGGCTGGGTCGCAGAGAAGC
TGACATCAAGAACAGATTCACTCTACCACCATTTTTGACATTAAAGAATT
TTCAGGGTTTGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTT
GCTGCCTATGTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAAGGACGT
GAAGTGGCTTCAAACAATCACCAAATTGCCAATTCTGGTGAAGGGTGTAC
TCACAGCAGAGGATGCGCGGATTGCAGTTCAAGCTGGAGCAGCTGGGATT
ATTGTATCCAATCATGGAGCTCGTCAACTTGACTATGTCCCTGCCACTAT
CATGGCCCTGGAAGAGGTTGTGAAAGCTACTCAGGGGCGTATTTCCTGTG
TTCTTGGATGGTGGTGTTAGGCGAGGAACTGATGTCTTCAAAGCATTGGC
ACTTGGAGCCTCTGGTATATTTATTTGGACGACCAGTGGTGTACTCATTT
GGCAGCTGGAGGGAAAGAAAGGGGTTAGAAGAGTACTCGAGATGCTGCGT
GGAGAAATTTTGAACTACCAATGGCACTAATGGGTTGCCGCTCACTCAAA
AAGAATTTACTCGGGATCACATCGTCCCTGAAAGGGGAAGCTTCCTCTCC
CTCCCCCCGGTTCCCAGGGTAAAAGTTCCCTGGCAGGGCAAATAAAAAAA
AAAAAACAAAAAATTTTGGGTTAACTTTTTTTTTAATTTCTTTTTTTTGG
GAAAAATTTGGTTTAGGGGTTTAATTGGGGTCCTGAAATTATTTTTTAAA
CCTTCCGGGTAAAAGAAGAAAATAAGGGGGCACCCTTCTGGCCCCC