EY679579

Overview
NameEY679579
Unique NameEY679579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679579 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.045e-19
Identity = 56/170 (32.94%), Postives = 92/170 (54.12%), Query Frame = 3
Query:   18 MALRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 524
            M+ +PA  YR I    Y +  +  G+P  K+  Y +G  +   +++   + L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA  K      I V R
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRAYNKISPPCTIKVER 170          
BLAST of EY679579 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.764e-14
Identity = 49/170 (28.82%), Postives = 86/170 (50.59%), Query Frame = 3
Query:   24 LRPARCYRQIKNKPYPK------SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSHHAQEALRRAKFKFPGRQK 509
            LR   CYR+++  PY +        +  G     +R++ +G   +   E+ +   LV+ E   +   A+EA R+  NKY+    GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +   +  L+ A+ K P R +
Sbjct:    4 LRRWHCYRKLE-VPYTRVSRSKNKNYIPGAKPTMVRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172          
The following BLAST results are available for this feature:
BLAST of EY679579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD2.045e-1932.9450S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ5.764e-1428.8250S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-G06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679579 ID=EY679579; Name=EY679579; organism=Citrus sinensis; type=EST; length=929bp
CGAAACGAACGCTCGCCATGGCCTTAAGACCGGCAAGGTGTTACCGCCAA
ATCAAGAACAAACCCTACCCAAAGTCCCGCTTTTGCCGCGGTGTCCCCGA
TCCCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAGGCGTCGACG
AGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAGAACGTGTCG
AGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTACATGGCCAA
GTACGCCGGCAAGGATGCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCC
ATGTTCTGCGTATTAACAAGATGCTTTCGTGTGCTGGGGCTGATAGGCTC
CAGACTGGAATGAGGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCG
TGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGATAGTAACA
GCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGT
CGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCG
TGCTGATTATCTGCGGTGGAAGTCGGAGAACAGGATTGTCCCAGAAGGTG
TGAAGGCCAGGCTTCTCGGAGGTCAGGGCCCTTTGGCTCACCGGTCACCT
GGAAGAACTTTCCGGGAAGCCACAACCTAAGATAATTTACGGTCTCAAAA
TAGCAAAGCTGGGGGCTACGGGCCATTTTATTATTTTCCATTTCCTACCT
TTTTTCCAGTTGGAACTGGGATTTCTCCAGTTTGAAGGGCCTGGTTTTCT
TTTGGTTTAAACATTGGGGAACCCCTTGGCAATTGGTTTTTAGGGGGATT
TGGCAATTTTGGCCCCCTTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGGGCCGCCTCTCAA
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