EY679514

Overview
NameEY679514
Unique NameEY679514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 2.217e-77
Identity = 145/203 (71.43%), Postives = 163/203 (80.30%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGD--TDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILH+QGGQCGNQIGSKFWEV+C EHG+DPTGKY GD  +D+QLERI+VYYNEAS GRYVPRAVLMDLEPGTMDS+RSGP GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  +  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 202          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.896e-77
Identity = 145/201 (72.14%), Postives = 162/201 (80.60%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIG+KFWEV+C EHGID TG+  GDTDLQLERINVY+NEAS G+YVPRAVLMDLEPGTMDS+RSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  +  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.451e-77
Identity = 144/201 (71.64%), Postives = 162/201 (80.60%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILHIQGGQCGNQIGSKFWEVVC EHGIDPTG+   ++DLQL+RINVYYNEAS GRYVPRAVLMDLEPGTMDSV++GP+GQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC+CLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQLDRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGHQLVENADECM 200          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.451e-77
Identity = 133/151 (88.08%), Postives = 141/151 (93.38%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREILH+QGGQCGNQIG+KFWEVVC EHGIDPTG Y+GD++ QLER+NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSG YGQ+FRPDNFVFGQSGAGNNWAKG YTEGAELIDSVL VVRKEAENCDCLQGFQVC SL GGTGSGMG  +
Sbjct:    1 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYRGDSETQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGHYGQIFRPDNFVFGQSGAGNNWAKGXYTEGAELIDSVLAVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL 151          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.877e-76
Identity = 144/201 (71.64%), Postives = 161/201 (80.10%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREI+HIQGGQCGNQIG+KFWEVV  EHGIDPTG Y GD+DLQLERINVY+NEA+ GRYVPRA+LMDLEPGTMDSVRSGPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+ P P  S         TL  ++L EN D+ M
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECM 200          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.877e-76
Identity = 144/201 (71.64%), Postives = 161/201 (80.10%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREI+HIQGGQCGNQIG+KFWEVV  EHGIDPTG Y GD+DLQLERINVY+NEA+ GRYVPRA+LMDLEPGTMDSVRSGPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+ P P  S         TL  ++L EN D+ M
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECM 200          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.451e-76
Identity = 145/203 (71.43%), Postives = 162/203 (79.80%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKY--QGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREILH+QGGQCGNQIGSKFWEV+C EHGID TGKY  +G +D QLERINVYYNEAS GRYVPRAVLMDLEPGTM+S+RSGP+G++FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGIDQTGKYISEGGSDTQLERINVYYNEASGGRYVPRAVLMDLEPGTMESIRSGPFGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 202          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.451e-76
Identity = 143/201 (71.14%), Postives = 161/201 (80.10%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREI+HIQGGQCGNQIG+KFWEVV  EHG+DPTG Y GD+DLQLERINVY+NEA+ GRYVPRA+LMDLEPGTMDSVRSGPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+ P P  S         TL  ++L EN D+ M
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECM 200          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.589e-75
Identity = 140/192 (72.92%), Postives = 156/192 (81.25%), Query Frame = 1
Query:  100 GQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            GQCGNQIGSKFWEVVC EHGIDPTG+Y G++DLQLER+NVYYNEASCGR+VPRA+LMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVC SL GGTGSGMG  +   +   +   +  L  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 191          
BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 4.623e-75
Identity = 139/201 (69.15%), Postives = 160/201 (79.60%), Query Frame = 1
Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFVEYQR*NRKTGIK*WLLSSIFPFP*GS*NWC*T*QTTLLDNRLFENEDKRM 675
            MREI+HIQ GQCGNQIG+KFWEV+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+  SL GGTGSGMG  +   +   +   +  +  S+FP P  S         TL  ++L EN D+ M
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLL-ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVM 200          
The following BLAST results are available for this feature:
BLAST of EY679514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 416
Match NameE-valueIdentityDescription
TBB6_GOSHI2.217e-7771.43Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB9_ARATH2.896e-7772.14Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_DAUCA6.451e-7771.64Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB1_ANEPH6.451e-7788.08Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_CHLRE1.877e-7671.64Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB1_VOLCA1.877e-7671.64Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB_CICAR2.451e-7671.43Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB_CHLIN2.451e-7671.14Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB3_PEA1.589e-7572.92Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB_NAEGR4.623e-7569.15Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-052-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679514 ID=EY679514; Name=EY679514; organism=Citrus sinensis; type=EST; length=945bp
AAAAGAAAAGGAAGAATCCCCCCTTTTTATCCTCTGCAAATCTCGCTAAT
CAAGAAACCCCAACTTAAGAAAATGCGTGAAATCCTTCACATTCAAGGGG
GCCAATGCGGGAACCAAATCGGATCCAAGTTCTGGGAAGTGGTTTGCGCC
GAGCACGGCATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCA
GCTTGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACG
TGCCTAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATGGATAGCGTC
AGGTCTGGTCCGTACGGTCAGGTTTTTAGGCCCGACAATTTTGTCTTTGG
CCAGTCCGGCGCCGGAAACAACTGGGCGAAGGGGCATTATACTGAAGGAG
CTGAGCTGATTGATTCTGTGCTTGATGTTGTTCGTAAAGAAGCCGAGAAC
TGCGATTGCTTGCAGGGATTTCAGGTGTGCCCTTCTCTGGTAGGAGGGAC
GGGTTCCGGGATGGGAAACTTTGTTGAATATCAAAGATAAAATAGGAAAA
CCGGGATAAAATGATGGCTACTTTCCTCTATTTTCCCCTTCCCCTAAGGC
TCCTGAAACTGGTGTTGAACCTAACAAACAACACTTCTAGATAATCGACT
ATTTGAAAATGAAGATAAACGGATGGGTTTTTGATAATGAAGCCCTTTAA
ATAAATATGGTTTTCCGACACCATAAAATACAAATCCTCTAAAAATTGGG
AGGTAATCAACTAATATATACTCTAGATACAACGCCAAGAAATTAAATTT
GTTTTTTAATAAAACCCCGGATATAAATAATTTAACATTTTTTTAAAATA
TTAGTGAAAATGATCCATTATTCATTTTTAAAAAATTTACAAATTTTTTT
TCATGTAGGCGAAATATTGTCCCCTATTGACATAACTCCCTGTGT
back to top