EY679514 | Citrus Genome Database

Overview


Name	EY679514
Unique Name	EY679514
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	945

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB5_MOUSE (Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQL+RI+VYYNEA+ G+YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB5_MACMU (Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQL+RI+VYYNEA+ G+YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB5_HUMAN (Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQL+RI+VYYNEA+ G+YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQL+RI+VYYNEA+ G+YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQL+RI+VYYNEA+ G+YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2B_MOUSE (Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2B_HUMAN (Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

BLAST of EY679514 vs. ExPASy Swiss-Prot
Match: TBB2B_BOVIN (Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 3.953e-73
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 1

Query:   73 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCPSLVGGTGSGMGNFV 525
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ+  SL GGTGSGMG  +
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLL 151

HSP 2 Score: 25.0238 bits (53), Expect = 3.953e-73
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 2

Query:  587 PSPKAPETGVEPNKQHF*IIDYLKMKINGWVFDNEAL*INMVFRHHKI 730
            PSPK  +T VEP      +   ++     +  DNEAL  ++ FR  K+
Sbjct:  171 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL-YDICFRTLKL 217

The following BLAST results are available for this feature:

BLAST of EY679514 vs. ExPASy Swiss-Prot

BLAST of EY679514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 416


Match Name	E-value	Identity	Description
TBB5_MOUSE	3.953e-73	82.12	Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1...	[more]
TBB5_MACMU	3.953e-73	82.12	Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 ...	[more]
TBB5_HUMAN	3.953e-73	82.12	Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV...	[more]
TBB5_CRIGR	3.953e-73	82.12	Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB...	[more]
TBB5_BOVIN	3.953e-73	82.12	Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S...	[more]
TBB2_CHICK	3.953e-73	82.12	Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1	[more]
TBB2B_RAT	3.953e-73	82.12	Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb...	[more]
TBB2B_MOUSE	3.953e-73	82.12	Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE...	[more]
TBB2B_HUMAN	3.953e-73	82.12	Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE...	[more]
TBB2B_BOVIN	3.953e-73	82.12	Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-052-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679514 ID=EY679514; Name=EY679514; organism=Citrus sinensis; type=EST; length=945bp
AAAAGAAAAGGAAGAATCCCCCCTTTTTATCCTCTGCAAATCTCGCTAAT
CAAGAAACCCCAACTTAAGAAAATGCGTGAAATCCTTCACATTCAAGGGG
GCCAATGCGGGAACCAAATCGGATCCAAGTTCTGGGAAGTGGTTTGCGCC
GAGCACGGCATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCA
GCTTGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACG
TGCCTAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATGGATAGCGTC
AGGTCTGGTCCGTACGGTCAGGTTTTTAGGCCCGACAATTTTGTCTTTGG
CCAGTCCGGCGCCGGAAACAACTGGGCGAAGGGGCATTATACTGAAGGAG
CTGAGCTGATTGATTCTGTGCTTGATGTTGTTCGTAAAGAAGCCGAGAAC
TGCGATTGCTTGCAGGGATTTCAGGTGTGCCCTTCTCTGGTAGGAGGGAC
GGGTTCCGGGATGGGAAACTTTGTTGAATATCAAAGATAAAATAGGAAAA
CCGGGATAAAATGATGGCTACTTTCCTCTATTTTCCCCTTCCCCTAAGGC
TCCTGAAACTGGTGTTGAACCTAACAAACAACACTTCTAGATAATCGACT
ATTTGAAAATGAAGATAAACGGATGGGTTTTTGATAATGAAGCCCTTTAA
ATAAATATGGTTTTCCGACACCATAAAATACAAATCCTCTAAAAATTGGG
AGGTAATCAACTAATATATACTCTAGATACAACGCCAAGAAATTAAATTT
GTTTTTTAATAAAACCCCGGATATAAATAATTTAACATTTTTTTAAAATA
TTAGTGAAAATGATCCATTATTCATTTTTAAAAAATTTACAAATTTTTTT
TCATGTAGGCGAAATATTGTCCCCTATTGACATAACTCCCTGTGT