EY679491

Overview
NameEY679491
Unique NameEY679491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length982
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE +EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H331_CAEEL (Histone H3.3 type 1 OS=Caenorhabditis elegans GN=his-71 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQE +EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE  EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE  EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE  EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE  EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQE  EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 2.142e-54
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQD+K DLRFQS AVLALQE  EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.797e-54
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQE +EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 117
[Close]
BLAST of EY679491 vs. ExPASy Swiss-Prot
Match: H3_SOLST (Histone H3, embryonic OS=Solaster stimpsoni PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.797e-54
Identity = 108/117 (92.31%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSPAVLALQEGTEAYLVGHFEDTNLCAIPAKR 396
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQE +EAYLVG FEDTNLCAI AKR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 117
The following BLAST results are available for this feature:
BLAST of EY679491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H332_CAEEL1.640e-5493.16Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H331_CAEEL1.640e-5493.16Histone H3.3 type 1 OS=Caenorhabditis elegans GN=h... [more]
H31_RAT1.640e-5493.16Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA1.640e-5493.16Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE1.640e-5493.16Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN1.640e-5493.16Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN1.640e-5493.16Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H33A_LILLO2.142e-5493.16Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3_STRDR2.797e-5492.31Histone H3, embryonic OS=Strongylocentrotus droeba... [more]
H3_SOLST2.797e-5492.31Histone H3, embryonic OS=Solaster stimpsoni PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-057-G08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679491 ID=EY679491; Name=EY679491; organism=Citrus sinensis; type=EST; length=982bp
CCCGCGTCCGGAGAAATTGAGTAGAGGAGTTGAATAAACTCAGAGATGGC
CCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCTAGGA
AGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGGTGGT
GTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAGAAAT
TCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCATTCC
AGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCGTTTC
CAGAGCCCTGCAGTGCTGGCTCTGCAGGAGGGAACGGAGGCTTACCTTGT
TGGTCACTTCGAGGACACTAACCTCTGCGCCATTCCTGCTAAGCGGTGCT
CCAATTATGCCCTAGGACATTTAGTTTGACCGTAAGATCCGTGGAAAGGC
GTGCTTTAACGAAATTGTTGGTATGCTCTCTTTTTTAATGATCGGATAGG
CAAGGGGGCCTTTGAAATGGGATTATGTTTGTTCGTGTGAGATTTTTTAA
GAGGTGTTTATTTATATTAATATGTTTTTGATAAGTGCAATTATATTGAT
ACTAATGAAAATGAATCAAAATTAATGTATTTAAATATTATTATTTAAAA
TATTAAACGTAAATAATACCATATAAATGAAAAAAAAGAATTAAGAAAAA
AAATAACGATTATAACAATAGAATTAATAATGTTTAATAGATATTGAACA
CCATCCTCGATAATATTATTAATAGACAAGATATCGAGGTTGTGGACCAG
TTTGTTTATATATTGTGTATTAGTATAGCGTTATAATTCATTTTTGAAGA
ACCTAGAGATATAACTCATACAGAGTTAGAAGTATCTTTCTGATACATTT
TTTTCTATTGAAATAGAAGATATTATAAGATTAATGATACAATTATAGAT
TCGAGGGATAATAATAAAGTTTTTTTCAGTAC
back to top