EY679474 | Citrus Genome Database

Overview


Name	EY679474
Unique Name	EY679474
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	941

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 8.671e-24
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYT 74

HSP 2 Score: 41.2022 bits (95), Expect = 8.671e-24
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHA+  TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHAKCKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.671e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 42.3578 bits (98), Expect = 8.671e-24
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of EY679474 vs. ExPASy Swiss-Prot

BLAST of EY679474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_APLCA	8.671e-24	86.79	Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S...	[more]
H4_STRPU	8.671e-24	90.00	Histone H4 OS=Strongylocentrotus purpuratus PE=3 S...	[more]
H4_PYCHE	8.671e-24	90.00	Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2	[more]
H4_PSAMI	8.671e-24	90.00	Histone H4 OS=Psammechinus miliaris PE=1 SV=2	[more]
H4_PISOC	8.671e-24	90.00	Histone H4 OS=Pisaster ochraceus PE=3 SV=2	[more]
H4_PISBR	8.671e-24	90.00	Histone H4 OS=Pisaster brevispinus PE=3 SV=2	[more]
H4_PARLI	8.671e-24	90.00	Histone H4 OS=Paracentrotus lividus PE=3 SV=2	[more]
H4_LYTPI	8.671e-24	90.00	Histone H4 OS=Lytechinus pictus PE=3 SV=2	[more]
H4_HOLTU	8.671e-24	90.00	Histone H4 OS=Holothuria tubulosa PE=3 SV=2	[more]
H4_CAEEL	8.671e-24	90.00	Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-057-F01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679474 ID=EY679474; Name=EY679474; organism=Citrus sinensis; type=EST; length=941bp
ACTAATCAAGGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAA
CAGCGGAAAGTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGG
GAGGCAAGGGATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTT
CGCGATAACATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCG
TATAGGTGGAGTCAAGCGTATCAGCGGCTTGATCTTCGAGGAGACACGTG
GCGCCCTGAAGATATTCTTGGAGAACGTCATCCGTGACCCCGTGATCCTA
ACACTGAACACGCCAGGAGAATTACCGTGACCGCGATGGACGTACATTAC
GCTCTCAGGAGGTAGGCTAGGAATACTTATGGAATCGGGGGTTAATTGCC
ATAAGGATACTGAGAATAATAGGGAATAAAACATGAATCTTAGATTTTAT
TCTGGTAGATGGGGTTCTTACAAGATTGAACATATGGTGTTAATTAGCAA
ATACTAACATAGATAAATCATATCAATAAAATTGAAGACAATAAAGAAAT
AGTTTCTTCTCCATCAAACCAATCCAATAATATACTGAGTATCCATTAAT
AGCTAAACAATATATCATGAAGTCTGTAGTTAAAGACTATATTATACACA
AAAAAATTAATCATTTTAATTACTGGCTAAGTCTTTTATATGCATATGGA
CCGGAACATACTAGTGTTTTACATAACAATTCCTCGTTCATATAAATCCT
CTAATTTACTCTCGCATGATAAAGTATCAGAACTAGACACTACGTAATCT
CTTACTACAATTTTGCCTATGTATTATCTGAAAATGTATTATTAAACCTC
ATATACTATTATATATATCATCTCAATCACTCGTTTCACTCAGCTTTTGT
TAAATAAGCTACTATAACCTGAGCGCTCCTCGGTTACAGAA