EY679474 | Citrus Genome Database

Overview


Name	EY679474
Unique Name	EY679474
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	941

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PHACH (Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.129e-23
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            +LRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYT 74

HSP 2 Score: 40.817 bits (94), Expect = 1.129e-23
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIG 389
            TEHA+R TVTA+DV YAL+R  R  YG G
Sbjct:   74 TEHAKRKTVTALDVVYALKRSGRTLYGFG 102

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_AGABI (Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.129e-23
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            +LRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LKIFLENVIRD V  T
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYT 74

HSP 2 Score: 40.817 bits (94), Expect = 1.129e-23
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIG 389
            TEHA+R TVTA+DV YAL+R  R  YG G
Sbjct:   74 TEHAKRKTVTALDVVYALKRSGRTLYGFG 102

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_DIAPU (Histone H4 OS=Diadromus pulchellus PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.129e-23
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+F +NVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFWQNVIRDAVTYT 74

HSP 2 Score: 44.2838 bits (103), Expect = 1.129e-23
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHA+R TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_CHLRE (Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.129e-23
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETR  LK FLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKTFLENVIRDSVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 1.129e-23
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_SOLST (Histone H4 OS=Solaster stimpsoni PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.912e-23
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPV 294
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETRG LK+FLENVIRD V
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAV 71

HSP 2 Score: 41.2022 bits (95), Expect = 1.912e-23
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  306 EHARRITVTAMDVHYALRR*ARNTYGIGG 392
            EHA+R TVT+MDV YAL+R  R  YG GG
Sbjct:   75 EHAKRKTVTSMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_EIMTE (Histone H4 OS=Eimeria tenella PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.912e-23
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EE RG LK+FLEN+I+D V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEEIRGVLKVFLENIIKDSVTYT 74

HSP 2 Score: 43.8986 bits (102), Expect = 1.912e-23
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMD+ Y+L+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDIVYSLKRQGRTLYGFGG 103

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_VOLCA (Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.912e-23
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRISGLI+EETR  LK FLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKNFLENVIRDSVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 1.912e-23
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_PHYPO (Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.488e-23
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRIS  I+EETRG LK FLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISNTIYEETRGVLKTFLENVIRDAVTYT 74

HSP 2 Score: 45.4394 bits (106), Expect = 2.488e-23
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHARR TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_MORAP (Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.239e-23
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            +LRDNIQGITKPAIRRLAR GGVKRISGLI+EETR  LK+FLENVIRD V  T
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYT 74

HSP 2 Score: 41.9726 bits (97), Expect = 3.239e-23
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHA+R TVT++DV YAL+R  R  YG GG
Sbjct:   74 TEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of EY679474 vs. ExPASy Swiss-Prot
Match: H4_TRICD (Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.215e-23
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1

Query:  145 VLRDNIQGITKPAIRRLARIGGVKRISGLIFEETRGALKIFLENVIRDPVILT 303
            VLRDNIQGITKPAIRRLAR GGVKRIS LI+EETRG LK+FLENVIRD V  T
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISSLIYEETRGVLKVFLENVIRDAVTYT 74

HSP 2 Score: 41.2022 bits (95), Expect = 4.215e-23
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 3

Query:  303 TEHARRITVTAMDVHYALRR*ARNTYGIGG 392
            TEHA+  TVTAMDV YAL+R  R  YG GG
Sbjct:   74 TEHAKIPTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of EY679474 vs. ExPASy Swiss-Prot

BLAST of EY679474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_PHACH	1.129e-23	86.79	Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 ...	[more]
H4_AGABI	1.129e-23	86.79	Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2	[more]
H4_DIAPU	1.129e-23	83.02	Histone H4 OS=Diadromus pulchellus PE=3 SV=3	[more]
H4_CHLRE	1.129e-23	84.91	Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE...	[more]
H4_SOLST	1.912e-23	90.00	Histone H4 OS=Solaster stimpsoni PE=3 SV=2	[more]
H4_EIMTE	1.912e-23	81.13	Histone H4 OS=Eimeria tenella PE=3 SV=3	[more]
H4_VOLCA	1.912e-23	84.91	Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2	[more]
H4_PHYPO	2.488e-23	83.02	Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV...	[more]
H4_MORAP	3.239e-23	83.02	Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3	[more]
H4_TRICD	4.215e-23	84.91	Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-057-F01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY679474 ID=EY679474; Name=EY679474; organism=Citrus sinensis; type=EST; length=941bp
ACTAATCAAGGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAA
CAGCGGAAAGTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGG
GAGGCAAGGGATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTT
CGCGATAACATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCG
TATAGGTGGAGTCAAGCGTATCAGCGGCTTGATCTTCGAGGAGACACGTG
GCGCCCTGAAGATATTCTTGGAGAACGTCATCCGTGACCCCGTGATCCTA
ACACTGAACACGCCAGGAGAATTACCGTGACCGCGATGGACGTACATTAC
GCTCTCAGGAGGTAGGCTAGGAATACTTATGGAATCGGGGGTTAATTGCC
ATAAGGATACTGAGAATAATAGGGAATAAAACATGAATCTTAGATTTTAT
TCTGGTAGATGGGGTTCTTACAAGATTGAACATATGGTGTTAATTAGCAA
ATACTAACATAGATAAATCATATCAATAAAATTGAAGACAATAAAGAAAT
AGTTTCTTCTCCATCAAACCAATCCAATAATATACTGAGTATCCATTAAT
AGCTAAACAATATATCATGAAGTCTGTAGTTAAAGACTATATTATACACA
AAAAAATTAATCATTTTAATTACTGGCTAAGTCTTTTATATGCATATGGA
CCGGAACATACTAGTGTTTTACATAACAATTCCTCGTTCATATAAATCCT
CTAATTTACTCTCGCATGATAAAGTATCAGAACTAGACACTACGTAATCT
CTTACTACAATTTTGCCTATGTATTATCTGAAAATGTATTATTAAACCTC
ATATACTATTATATATATCATCTCAATCACTCGTTTCACTCAGCTTTTGT
TAAATAAGCTACTATAACCTGAGCGCTCCTCGGTTACAGAA