EY679361

Overview
NameEY679361
Unique NameEY679361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679361 vs. ExPASy Swiss-Prot
Match: KNAT5_ARATH (Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.963e-46
Identity = 94/144 (65.28%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    4 HVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSL---DQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTVS*NLKLAE 426
            HV VHA+EA+  C EIE +LQ+LTGVS  E  G TMSDDEDD  ++  +   D S   S  LMGFGPL+PTE ERSLMERV++ELK ELKQGFK +I D+REEI+RKRRAGKLPGDTTSVLK WW+ HSKWPYPT     KL +
Sbjct:  198 HVCVHAMEAITACWEIEQSLQSLTGVSPSESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQ 341          
BLAST of EY679361 vs. ExPASy Swiss-Prot
Match: KNOX1_MAIZE (Homeobox protein knotted-1-like 1 (Fragment) OS=Zea mays GN=KNOX1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.494e-25
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 1
Query:  235 VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTVS*NLKLAE 426
            VRQELK+ELKQGFKSRIEDVREEILRKRRAGKLPGDTTS+LK WWQ+HSKWPYPT     KL E
Sbjct:    1 VRQELKLELKQGFKSRIEDVREEILRKRRAGKLPGDTTSILKQWWQEHSKWPYPTEDDKAKLVE 64          
BLAST of EY679361 vs. ExPASy Swiss-Prot
Match: KNOX2_MAIZE (Homeobox protein knotted-1-like 2 (Fragment) OS=Zea mays GN=KNOX2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.155e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  235 VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTVS*NLKLAE 426
            VRQELK ELKQG++ ++ D+REEILRKRRAGKLPGDT S LK WWQ HSKWPYPT     +L +
Sbjct:    1 VRQELKHELKQGYRDKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQ 64          
BLAST of EY679361 vs. ExPASy Swiss-Prot
Match: KNOX7_MAIZE (Homeobox protein knotted-1-like 7 (Fragment) OS=Zea mays GN=KNOX7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.489e-19
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  244 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTVS*NLKLAE 426
            ELK ELKQG+K ++ D+REEI+RKRRAGKLPGDT SVLK WWQ HSKWPYPT     +L +
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQ 61          
BLAST of EY679361 vs. ExPASy Swiss-Prot
Match: KNOX6_MAIZE (Homeobox protein knotted-1-like 6 (Fragment) OS=Zea mays GN=KNOX6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.489e-19
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  244 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTVS*NLKLAE 426
            ELK ELKQG+K ++ D+REEI+RKRRAGKLPGDT SVLK WWQ HSKWPYPT     +L +
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQ 61          
The following BLAST results are available for this feature:
BLAST of EY679361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
KNAT5_ARATH1.963e-4665.28Homeobox protein knotted-1-like 5 OS=Arabidopsis t... [more]
KNOX1_MAIZE2.494e-2584.38Homeobox protein knotted-1-like 1 (Fragment) OS=Ze... [more]
KNOX2_MAIZE3.155e-2068.75Homeobox protein knotted-1-like 2 (Fragment) OS=Ze... [more]
KNOX7_MAIZE3.489e-1968.85Homeobox protein knotted-1-like 7 (Fragment) OS=Ze... [more]
KNOX6_MAIZE3.489e-1968.85Homeobox protein knotted-1-like 6 (Fragment) OS=Ze... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679361 ID=EY679361; Name=EY679361; organism=Citrus sinensis; type=EST; length=928bp
CAGCACGTCAGAGTCCATGCCGTTGAAGCTGTCATGGGCTGCCGTGAAAT
TGAGAATACTTTGCAAGCTCTCACCGGAGTATCATTGGGTGAAGGGACAG
GCGCAACAATGTCTGACGATGAGGATGACCTACATATGGATTTCTCTCTT
GATCAATCTGCTTCTGATAGTCATGATTTGATGGGTTTTGGTCCATTACT
TCCTACTGAAACTGAAAGGTCTCTTATGGAAAGAGTTAGACAGGAGTTGA
AGATTGAACTGAAGCAGGGTTTTAAATCAAGAATTGAAGATGTAAGAGAG
GAAATATTGAGAAAAAGAAGGGCCGGAAAATTGCCCGGTGACACAACTTC
AGTGCTCAAGACTTGGTGGCAGCAACACTCCAAATGGCCATACCCAACTG
TAAGTTAAAACTTAAAACTTGCTGAAAATCATGCAGCATCTCATATAATA
AAAGCTTTATAGTGTTTGACATTTTGGGTTAAAGCACTGCACCATCAGAA
ACTAAATTTCCTCGTGAGCTGGATTCAAACCACAGACCTCTTTAAACCAA
CTGGCACTCATAACCATATATACGAATTTATATAACTTCCATGAATATCC
TCAACTTAATGGAATAAATTATTGCCCAAATAAAACATGTGGCAATAAAT
GGTGTAACTTGGCAGGAAGAATGACAGGGCCAAAGCTAGTGGAAGGAGAC
AGGGTTTGCAACTTAAAGGCAATTCACCAACTGGGTTCCTCCAACCAAAA
GAAAGCCGAAATGGGGCACCCCACATTCCCGATCCTGGTGACGTCTTTTA
AAGTCCAACCCCGCAAAAAGGGAAAAAAAATTTCCCCCAAAAATATTTTT
GGGCAAATAATTTATATTGATTTTTTGAAACTATGAAGGGAATTAACCTT
CCTTTTTTTTGGGTCCACAAACAACATT
back to top