EY679360

Overview
NameEY679360
Unique NameEY679360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  173 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTGV-IPPAGTYNYWADP 481
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   EA   WF+ G  I   G  +Y  +P
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNP 147          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 48/107 (44.86%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  173 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTG-VIPPAGTYNYWADP 481
            G+DRPL+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   EA   WF+ G  I   G  +Y  +P
Sbjct:   51 GSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEA--VWFKAGSQIFAEGGLDYLGNP 149          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  173 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTG-VIPPAGTYNYWADP 481
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   EA   WF+ G  I   G  +Y  +P
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNP 149          
BLAST of EY679360 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  173 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQEAALAWFQTG-VIPPAGTYNYWADP 481
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   EA   WF+ G  I   G  +Y  +P
Sbjct:   23 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNP 121          
The following BLAST results are available for this feature:
BLAST of EY679360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CB23_ORYSI4.324e-1145.79Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU7.375e-1144.86Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB26_PETSP9.632e-1145.79Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC9.632e-1145.79Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679360 ID=EY679360; Name=EY679360; organism=Citrus sinensis; type=EST; length=892bp
GGAAAAAAGTAATTAAAAAATGGCAACCCAAGCTTTGGTTTCATCATCTC
TTACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCT
CAATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGC
TTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGTTGTGGTTTGCAT
CCAAACAAAGCCTTTCATACTTGGATGGCAGCCTCCCCGGAGACTATGGA
TTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACAGGAGGGTTCATTGA
GCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGGTCGTTATGCCATGT
TGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTGGCAAGGCAGGCCTC
ATTCCGCAAGAAGCTGCCCTGGCCTGGTTCCAAACCGGTGTGATCCCCCC
AGCGGGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCCTGG
AAATGGGCACTCATGGGGATTTGCCGAGCACCGGAAGATTCCAAGAATGG
GCAAATCCTGGATTCAATGGGGAAGGCAATACTTTCCCTTCGGAATTCGA
AAAAAACTTGGGAGGGTCCGGGCAATCCGGCTTAACCTGGAGGACCCTTT
AATTCACCCTTCGGGGCTTGGGAAAAAAGAAAAGTCAATGGAAGGAATTT
CAACCTCTGGGAAATGGAAAAATGGAAAAATGGAATAGGTTGGGATTTTG
GGGTTACGTTTGGTACAAGGTTTTGGTTACAGGAATAGGGGGTCTAATCA
AAAAACCAATGGGGATAACTTGGGATGGATCCTATAAAAAAAAAATGTTT
TTAGAAAAACCCTCCAGGATTACACTAAAAAAAAAGAAATGT
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