EY679353

Overview
NameEY679353
Unique NameEY679353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  227 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            KV INGFGRIGR   R  +  +   +++VA+ND    V  A+++LKYDST G F   V+  G   I V+GK I+  + R+P  +P  + G   V+E TGVF  +E
Sbjct:    5 KVGINGFGRIGRIVFR--NAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRFNGTVEFDGNTLI-VNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQE 106          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREGCG 547
            +KV +NGFGRIGR   R         +EVVAIND    +    ++ +YDST G F+  VK      + ++GK I +   R+P N+  GD G   V+E TGVF   E  G
Sbjct:    2 VKVGVNGFGRIGRLVTRA--AFTSGKVEVVAINDPFIDLNYMVYMFQYDSTHGKFKGTVK-AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAG 107          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            +++ INGFGRIGR  LR    ++++P+EVVAIND       ++L KYDST G F +  +   +DG  V G + I+ ++ ++   LP  DL + +V+E TG+FV ++
Sbjct:    1 MRIVINGFGRIGRLVLRQIL-KRNAPIEVVAINDLVSGDLLTYLFKYDSTHGSFAS--QATFSDGCLVVGERKIRFLAEKDVQKLPWKDLDVDVVVESTGLFVNKD 103          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVF 526
            ++VAINGFGRIGR  +R    R +  +EVVA+ND       A+++ KYDST G +  +V       I VDGK I     R+P NLP G   + + I+ TGVF
Sbjct:    2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSH-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVF 100          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.870e-11
Identity = 44/105 (41.90%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  227 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            KV INGFGRIGR  LR  +      ++VVA+ND    +   +++ KYDST G FE  V+  G   + +DG  I V + R+P N+     G   VIE TGVF  +E
Sbjct:    5 KVGINGFGRIGRIVLR--NAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKGGK-LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKE 106          

HSP 2 Score: 21.1718 bits (43), Expect = 7.870e-11
Identity = 12/46 (26.09%), Postives = 22/46 (47.83%), Query Frame = 3
Query:  525 LFTERGAGQSHFRLVGKKVII*APGQGGTSNPLLFGCQMVKFKSTK 662
            +FT +    +H +   K+VII AP +       + G  + KF  ++
Sbjct:  101 VFTTKETASAHLKGGAKRVIISAPSKDAPM--FVVGVNLEKFNPSE 144          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.318e-11
Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  224 LKVAINGFGRIGR-NFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLP-LGDLGIYLVIEGTGVFVYREGCGPITFQAGWQESNYISPRAGGNIQPIV 625
            +K+ INGFGRIGR  F R    G +   +EVVAIND       +HLLKYDST G F+ +V     D + VDGK  +V +     N+P + + G+  V+E TG F   +        AG  +   IS  AG +++ IV
Sbjct:    3 VKIGINGFGRIGRLAFRRIMDLGEETKDIEVVAINDLTTPAMLAHLLKYDSTHGTFDHEVSAT-EDSLVVDGKKYRVYAEPQAQNIPWVKNDGVDFVLECTG-FYTSKAKSQAHLDAG-AKRVLISAPAGNDLKTIV 136          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.318e-11
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  206 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            +++  K+K+ INGFGRIGR   R    R D  +E+VA+ND        +++ KYDS  G ++  +VK   ++ +    K + V   RNP+ +P G+ G+  V+E TGVF  +E
Sbjct:    1 MSSTGKIKIGINGFGRIGRLVARVALLRDD--IELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKE 111          
The following BLAST results are available for this feature:
BLAST of EY679353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
G3P_MONAN6.369e-1141.90Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_CRIGR6.369e-1139.45Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CHLMU6.369e-1139.62Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P3_YEAST6.369e-1143.14Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_SCHPO7.870e-1141.90Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_LACDE8.318e-1138.69Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]
G3PC_GINBI8.318e-1136.28Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679353 ID=EY679353; Name=EY679353; organism=Citrus sinensis; type=EST; length=968bp
CATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCCAAAT
CAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGC
AACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCCATTC
AGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACA
GGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGT
AGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCC
ACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCCTCTC
ACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAA
CCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGT
TTCTAACCGCAACCCCGACAATCTCCCCTTGGGGGACTTGGGCATCTACC
TTGTGATTGAAGGGACAGGAGTGTTTGTTTACAGAGAGGGGTGCGGGCCA
ATCACATTTCAGGCTGGTTGGCAAGAAAGTAATTATATAAGCCCCCGGGC
AGGGGGGAACATCCAACCCATTGTTGTTTGGATGTCAAATGGTGAAGTTT
AAAAGCACAAAATGAGCCTAATTATAGTAAATGTTTTATTGTACAACACA
ATGGTCTAGGATCACTTAGAAGAAGGTTTCTTTGAACCACATAGTATGGG
CATTATTCAAAGGGGAACAAAGGACCCACAACATCTTACATAAATGTGTA
TTATCTAAAAGGTAATCTATATAGTTAATACCAACCGTAGAAATAAAGAA
GTGGGAACAAAATAGTCATGACTATCTATAATATTATCCCCCCAACACTC
CATTTGTGATGGCTGAGACAAAAGATACTGGCAGGACCCCTGTGCTCTTT
CTCCCCAGTTTCATCACA
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