EY679353

Overview
NameEY679353
Unique NameEY679353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.115e-14
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            +KV INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL   ++G+ +V E TG+F+  E
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDE 104          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.762e-14
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVF 526
            + V INGFGRIGR  LR    RKD  +++VAIND     + AS++ KYDST G +  +V   G + I +DGK I+V   R+P N+P G  G+  VI+ TGVF
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKD--IQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSHEG-ENIVIDGKKIRVYQERDPVNIPWGKDGVDYVIDSTGVF 101          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.762e-14
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            +KV INGFGRIGR   R    R D  +E+V IND    +  ++ LKYDST G F+  V+ +    + V+GK I+V S R+P NL   ++G+ +V+E TG+F+ +E
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPD--IEIVGINDLLDAEYMAYSLKYDSTHGRFDGTVEVI-KGALVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQE 103          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 3.099e-14
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  227 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            KV INGFGRIGR  LR  +  +   +EVVA+ND       A ++ KYDST G F+ D+K  G D + +DGK I+    R+P N+P  D G   ++E TGVF   E
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIKVDGKD-LVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTE 105          

HSP 2 Score: 22.3274 bits (46), Expect = 3.099e-14
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 3
Query:  525 LFTERGAGQSHFRLVGKKVII*AP 596
            +FT      +HF+   KKVII AP
Sbjct:  100 VFTTTEKASAHFKGGAKKVIISAP 123          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.608e-14
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  227 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG--ISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVF 526
            ++AINGFGRIGRN LR    R DS L+VVA+ND       + LL YD+T G      +PV  +G  + VDG+ I V + R P NLP  +LG+ +V+E TG F
Sbjct:    3 RIAINGFGRIGRNVLRALLER-DSDLDVVAVNDLTEPATLARLLAYDTTSGRLG---RPVTVEGNVLVVDGRRITVTAEREPANLPWAELGVDIVLEATGRF 100          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.608e-14
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKD---SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR-NPDNLPLGDLGIYLVIEGTGVF 526
            ++V INGFGRIGRNF R    +++   + +EVVA+ND       +HLLK+DS LG    DV   G D I V    I+ +  R  P  LP GDLG+ +V+E TG+F
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVNDITDNSTLAHLLKFDSILGRLPYDVSLEGEDTIVVGPAKIKALEVREGPAALPWGDLGVDVVVESTGLF 107          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.608e-14
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            +KV INGFGRIGR  LR    +++S +EV+AIND       ++L K+DST G F  DV+    D + V  + IQ +S RN  NLP  DLG+ LVIE TG+F  +E
Sbjct:    1 MKVVINGFGRIGRLVLRQIL-KRNSSVEVLAINDLVPGDALTYLFKFDSTHGRFPEDVR-CEADHLIVGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKE 103          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.608e-14
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYRE 538
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL   ++G+ +V E TG+F+  E
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDE 104          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.029e-14
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVF 526
            +KV INGFGRIGR   R  H R    +EV  IND    K  +HLLKYDS    F  +V       + VDGK I+  + ++P  +P  + G+ +VIE TGVF
Sbjct:    1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA-YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVF 97          

HSP 2 Score: 23.8682 bits (50), Expect = 4.029e-14
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 3
Query:  525 LFTERGAGQSHFRLVGKKVII*APGQG 605
            +FT+    ++H     KKVII AP +G
Sbjct:   96 VFTDADKAKAHLEGGAKKVIITAPAKG 122          
BLAST of EY679353 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.712e-14
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  224 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPDNLPLGDLGIYLVIEGTGVFVYREG 541
            + V INGFGRIGR  LR    R D  ++VVAIND     + A+++ KYDST   ++ +V   G   I++DGK I V   R+P N+P G  G+  VIE TGVF   EG
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRAD--IKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSASGNK-INIDGKEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEG 106          
The following BLAST results are available for this feature:
BLAST of EY679353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
G3P1_SALTI2.115e-1443.81Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P_PICCI2.762e-1447.06Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3PC_LEIME2.762e-1442.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_TRIKO3.099e-1444.76Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_STRAU3.608e-1447.06Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_MYCAV3.608e-1444.76Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_CHLPN3.608e-1447.62Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P1_ESCF33.608e-1443.81Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_THEAQ4.029e-1443.56Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P_PICPA4.712e-1445.79Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679353 ID=EY679353; Name=EY679353; organism=Citrus sinensis; type=EST; length=968bp
CATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCCAAAT
CAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGC
AACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCCATTC
AGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACA
GGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGT
AGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCC
ACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCCTCTC
ACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAA
CCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGT
TTCTAACCGCAACCCCGACAATCTCCCCTTGGGGGACTTGGGCATCTACC
TTGTGATTGAAGGGACAGGAGTGTTTGTTTACAGAGAGGGGTGCGGGCCA
ATCACATTTCAGGCTGGTTGGCAAGAAAGTAATTATATAAGCCCCCGGGC
AGGGGGGAACATCCAACCCATTGTTGTTTGGATGTCAAATGGTGAAGTTT
AAAAGCACAAAATGAGCCTAATTATAGTAAATGTTTTATTGTACAACACA
ATGGTCTAGGATCACTTAGAAGAAGGTTTCTTTGAACCACATAGTATGGG
CATTATTCAAAGGGGAACAAAGGACCCACAACATCTTACATAAATGTGTA
TTATCTAAAAGGTAATCTATATAGTTAATACCAACCGTAGAAATAAAGAA
GTGGGAACAAAATAGTCATGACTATCTATAATATTATCCCCCCAACACTC
CATTTGTGATGGCTGAGACAAAAGATACTGGCAGGACCCCTGTGCTCTTT
CTCCCCAGTTTCATCACA
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