EY679352

Overview
NameEY679352
Unique NameEY679352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 3.842e-50
Identity = 110/213 (51.64%), Postives = 146/213 (68.54%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L  ++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 3.842e-50
Identity = 110/213 (51.64%), Postives = 146/213 (68.54%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L  ++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.842e-50
Identity = 111/213 (52.11%), Postives = 147/213 (69.01%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P TI  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-SSPTTINTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_BOVVA (Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 6.553e-50
Identity = 110/213 (51.64%), Postives = 145/213 (68.08%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L  ++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGIAPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FGPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_BORSA (Protein transport protein Sec61 subunit alpha OS=Boreogadus saida GN=sec61a PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 8.558e-50
Identity = 109/213 (51.17%), Postives = 148/213 (69.48%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTS L+MQLLAG+KIIEV ++ + DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L+IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSDLIMQLLAGAKIIEVGDSPK-DRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLVIIIQLFVAGLIVLLLDELLQKGYGLGSGISLLIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.460e-49
Identity = 108/213 (50.70%), Postives = 145/213 (68.08%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            GF+ L +++PF   LPE++   RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVI+ASNRGT+MELGITPIVTSGL+MQLLAG+K+IEV  +  +DRAL NGAQKL G+II IG++                +      ++QL    ++  +L+EL  KG GLG+GI L IATN+    + +S   P T+  G G + F+G
Sbjct:    2 GFKFLEVIKPFCIILPEIEKPQRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSESADPFYWMRVIMASNRGTLMELGITPIVTSGLIMQLLAGAKLIEV-GDTPKDRALFNGAQKLFGMIITIGQAVVYVMTGMYGDPSDMGAGICLLIIIQLFIASLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKS-FSPATVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 1.460e-49
Identity = 109/211 (51.66%), Postives = 146/211 (69.19%), Query Frame = 3
Query:  171 RVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    4 KFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.907e-49
Identity = 109/213 (51.17%), Postives = 146/213 (68.54%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGKQNFKG 803
            G + L +++PF A LPE+Q  +RK+ FREKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KII V  +  +DRAL NGAQKL G+II IG++                +      ++QL   G++  +L+EL  KG GLG+GI L IATN+    + ++   P T+  G G + F+G
Sbjct:    2 GIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIGV-GDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA-FSPTTVNTGRGTE-FEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 4.247e-49
Identity = 110/214 (51.40%), Postives = 146/214 (68.22%), Query Frame = 3
Query:  165 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYLVQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGK-QNFKG 803
            G + L +++PF   LPE+Q  +RK+ F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+ I IG+S                +       +QL   G++  +L+EL  KG GLG+GI L IATN+    + ++  F PT T+ TG+   F+G
Sbjct:    2 GIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMTITIGQSIVYVMTGMYGDPSEMGAGVCLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA--FSPT-TVNTGRGMEFEG 211          
BLAST of EY679352 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 5.547e-49
Identity = 113/221 (51.13%), Postives = 149/221 (67.42%), Query Frame = 3
Query:  171 RVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGESSCLCSLRNVW*C*PTWSREWPSYL---------VQLCYGGIMGSVLNELPSKGKGLGTGIPLIIATNVWGNFLGESLLFPPTITMGTGK-QNFKG 803
            + L +++PF   LPE+Q  +RK+ F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV  +  +DRAL NGAQKL G+II IG+S              T     PS +         +QL   G++  +L+EL  KG GLG+GI L IATN+    + ++  F PT T+ TG+   F+G
Sbjct:    4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGAQKLFGMIITIGQSIVYVM---------TGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA--FSPT-TVNTGRGMEFEG 211          
The following BLAST results are available for this feature:
BLAST of EY679352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_PAGBO3.842e-5051.64Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN3.842e-5051.64Protein transport protein Sec61 subunit alpha OS=N... [more]
S61A2_PONAB3.842e-5052.11Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_BOVVA6.553e-5051.64Protein transport protein Sec61 subunit alpha OS=B... [more]
SC61A_BORSA8.558e-5051.17Protein transport protein Sec61 subunit alpha OS=B... [more]
SC61A_HALRO1.460e-4950.70Protein transport protein Sec61 subunit alpha OS=H... [more]
S61A1_DANRE1.460e-4951.66Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_HEMAM1.907e-4951.17Protein transport protein Sec61 subunit alpha OS=H... [more]
S61A1_BOVIN4.247e-4951.40Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_RAT5.547e-4951.13Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679352 ID=EY679352; Name=EY679352; organism=Citrus sinensis; type=EST; length=932bp
TGGTGGGTGTTGGGGCGGCGGTCGGGTCGGGATTCCCGGGTCGACCCCGC
GTCCGCGTTTTAGCAGAATTCAGATTCATTTAACGTAACGTTTCTCTACG
GTTCTCCGATCCGCGAGTTCGTACGATTAGGTTGGTCTAGTTGGGACTGA
ATAAGATGGGAGGTGGATTCAGAGTGCTCCATCTTGTCCGGCCTTTTCTT
GCATTCCTTCCTGAGGTTCAGAGCGCTGACAGGAAGGTTCCTTTCAGAGA
GAAGGTTATCTACACTGTGATCTCTCTCTTCATATTCTTGGTGTGCAGTC
AGCTCCCGCTGTATGGCATACACTCGACAACTGGTGCGGATCCATTCTAT
TGGATGCGTGTTATTCTTGCTTCGAACCGTGGGACTGTGATGGAGCTTGG
TATCACCCCAATTGTGACATCTGGATTGGTGATGCAACTACTTGCCGGGT
CAAAGATCATTGAAGTGGACAATAATGTTCGCGAAGATCGTGCCCTATTA
AATGGTGCACAGAAGTTGCTGGGCATCATCATAGCTATTGGTGAAAGCAG
TTGCCTATGTTCTCTCAGGAATGTATGGTAGTGTTAACCAACTTGGAGTA
GGGAATGGCCTTCCTATCTTGTTCAGCTCTGCTATGGTGGAATAATGGGA
TCTGTTTTAAATGAACTCCCTTCAAAAGGTAAGGGCCTGGGAACCGGGAT
CCCCCTAATCATTGCAACCAATGTTTGGGGAAACTTCCTCGGGGAAAGCC
TTTTATTCCCCCCCACTATTACAATGGGAACGGGGAAGCAAAATTTTAAG
GGCTGGAATTTGCTTTTTTCCCCCTTTTGAATACATCCAATGAGGCAATT
TTCGGGGCCTTGTGGGAAAACTTTTATTCCGGAAGATAAAGCCCTAAAGG
TAGGAAGACCCATGTTGGGTCCACAGGCATGG
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