EY679347

Overview
NameEY679347
Unique NameEY679347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.624e-24
Identity = 69/177 (38.98%), Postives = 93/177 (52.54%), Query Frame = 1
Query:    4 SLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  I  GA    +RN  + A+ LA+E+I AA     +  +  K
Sbjct:   32 SLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFAYSRK 204          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.130e-23
Identity = 69/177 (38.98%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    4 SLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  I  GA    +RN  + AE LA+E+I AA     S  + +K
Sbjct:   32 SLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKK 204          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.153e-23
Identity = 57/152 (37.50%), Postives = 91/152 (59.87%), Query Frame = 1
Query:    1 ISLSDYIGVQAAKHATYVP--HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAA 450
            +S  +Y      ++ T  P  HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  I  G +  ++++ ++ A+ LA  +I AA
Sbjct:   53 VSEIEYEDPSTQRYITVTPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSYKSAQSAADSLAQVIIGAA 204          

HSP 2 Score: 21.557 bits (44), Expect = 1.153e-23
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YA+ +K+E +R+A+A R
Sbjct:  210 SYAVGQKEESERVAEAAR 227          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.294e-23
Identity = 69/177 (38.98%), Postives = 94/177 (53.11%), Query Frame = 1
Query:    4 SLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  I  GA    +R   + AE LA+E+I AA     S  + +K
Sbjct:   35 SLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKK 207          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.607e-23
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 1
Query:    4 SLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  I  GA    +R   + AE LA+E+I AA     S  + +K
Sbjct:   32 SLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKK 204          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.898e-20
Identity = 63/165 (38.18%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    7 LSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNS 468
            L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA   + +   +I E LA+E+INA   S  S
Sbjct:   21 LRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGAFHGSRKKPISIEEALAEEIINAYNNSLKS 181          
The following BLAST results are available for this feature:
BLAST of EY679347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_THECE6.624e-2438.9830S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_PYRFU1.130e-2338.9830S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_HALWD1.153e-2337.5030S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_PYRHO4.294e-2338.9830S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_PYRAB5.607e-2338.4230S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_NANEQ9.898e-2038.1830S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-B10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679347 ID=EY679347; Name=EY679347; organism=Citrus sinensis; type=EST; length=974bp
ATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTA
TGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCC
AATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTCGT
AACAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGA
GATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTGTTGATG
CTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATCTGCT
GGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCGTGTGAA
TCAAGCGATCTATCTAATCACCACTGGTGCTCGTGAATCTGCTTTTCGTA
ACATCAGGACTATTGCCGAATGCTTGGCCGATGAACTCATTAATGCTGCC
AAGGGTTCATCTAACAGCTTATGCCATCCAGAAAAAGGATGAGATTGATA
GAATGGCTAAAGCCAATCGCTGAAGTTCTGAAAATTGGATAATCCTATGC
ATTAAAGTTGTACTTTTTTTCATAAAAAAACTTTTTGGAACAATGGTTTA
TGTGCCTCTTTTGCAATTTTACCAATGGTTTGTTTCAAGGTTTTGAAGAG
TATGAAATTTGAGGATGGCTATTACTGGCTTTCCTGGGTATCCATTTTGC
CAAGGGGGGGGGAATGTTACAAAAGGAATTCTGGCCAAATTAAAATCAAA
TCTAGAAATTAAATGGGTTATTATAATTCCCGCCTGGTTGTGTATTTTAA
AAAATATAAAATATAAGGGGGGGGCCTCCTTCCTTGATGGGAACCCCGTT
TTACTTTATGGTCGTTGCTTGGTAAAACTTTTAAAAAACCTCATTCTTTA
ATAATTTCTACTAAATTATTACTAATTATATGGTGGACTGTCTTTTTCTT
ATTATGGTCCACAAATGCAAAGCG
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