EY679333

Overview
NameEY679333
Unique NameEY679333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_DEHSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.573e-12
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  159 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            TI       K +K++S +L + +L  I +L P +   + V P+ ALSQA+ AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL K GA++LGK ++ E++
Sbjct:    8 TIAQSHKLLKDHKISSAELTKAHLERIEKLEPEIKAFMTVCPETALSQAEAAD---KAIKQGDIRPLTGIPMALKDVLCTKG-IRTTCSSKMLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFA 128          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_DEHSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.360e-12
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  159 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            TI       K  K++S +L + +L  I +L P +   + V P+ ALSQA+ AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL K GA++LGK ++ E++
Sbjct:    8 TIAQSHKLLKDRKISSAELTKAHLERIEKLEPEIKAFMTVCPETALSQAEAAD---KAIKQGDIRPLTGIPMALKDVLCTKG-IRTTCSSKMLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFA 128          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_CHRSD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.277e-11
Identity = 46/129 (35.66%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  147 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            + + T+ +L    +  + +SR+L +  L  I RL+  L+  I V  + AL+ AD AD  R   A+G    L G+P+ LKD   T+  + T+ GS  L   V P DA VV K+R+AG + LGK ++ E++
Sbjct:    1 MHDKTLTELAAGLRAGEFSSRELCQSALDRIQRLDGDLNSFISVTAEQALADADAADQAR---ASGDAAALAGLPLALKDIFCTQG-VRTSCGSKMLDSFVAPYDATVVEKIRQAGGVSLGKTNMDEFA 125          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_MORCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moraxella catarrhalis GN=gatA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.715e-11
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  147 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            +   ++ +L    K  + +S +LVE +   I+RL+  ++  I  + D AL+QA  AD   K++A G  R L G+P+  KDN+ TK  + TTAGS  L   V P DA VV  +  +G + LGK ++ E++
Sbjct:    4 LHHLSVHELADGLKNKQFSSHELVEHFANRINRLDGQINSFITKDFDNALAQAKLAD---KLRAKGDNRPLLGVPMAHKDNLCTKGVL-TTAGSKMLYNFVSPYDATVVDSIANSGFVSLGKLNMDEFA 128          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.715e-11
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 3
Query:  159 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            +I+ L       + T+ ++   +L  I  L P +   + + PD AL+QA K D   K+    SL  L GIPI LKDN+ TK  + TT  S  L   V P ++ V  KLR  GA+I+GK +L E++
Sbjct:    3 SIRQLHQQLVNKEKTAVEIATEFLARIQALEPQVKSFLHLTPDLALAQAQKVD--EKIARGESLHLLAGIPIALKDNLCTKG-IPTTCASRILENFVPPYESTVTQKLRDLGAVIVGKTNLDEFA 124          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_DEHE1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.715e-11
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  159 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            TI       K+ KL+S +L   +L  I +L P +   + V P+ AL+QA  AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL + GA++LGK ++ E++
Sbjct:    8 TIAQSHKLLKERKLSSAELTRAHLDRIEKLEPEIKAFMTVCPESALAQAKAADEAIK---QGHIRPLTGIPMALKDVLCTKG-IRTTCSSRMLENFVPPYNAHVVDKLAEEGAVLLGKTNMDEFA 128          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_METFK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.852e-11
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 3
Query:  159 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            ++K L       +++S +L + YL  I +LNP ++  I VNP+ +L+QA  AD      A G    L GIPI  KD    K    TT GS  L   + P DAG++ +   AGA+ LGK ++ E++
Sbjct:    5 SLKQLADMLASKEISSVELTQEYLNRIAQLNPEINAYITVNPELSLAQAQAADQRI---ANGDAGPLTGIPIAQKDIFCAKG-WRTTCGSRMLENFIAPYDAGIIERFNAAGAVNLGKTNMDEFA 125          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_THEPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.338e-11
Identity = 44/125 (35.20%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  159 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            TI +L+   K+ ++++ ++ + YL  I  + P +  ++ +  D AL +A +AD   K+K  G    L GIP+++KDNI+T+  + TT  S  L   + P +A VV KL + G IILGK++L E++
Sbjct:    7 TIHELRELLKKREVSALEVTKSYLERIKEVEPKIDALVTITEDFALQKAKEAD--EKIKK-GEDTALTGIPVIIKDNISTEG-IKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFA 127          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_THEP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.338e-11
Identity = 45/125 (36.00%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  159 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            TI +L+   K+ ++++ ++ + YL  I  + P +  +I +  D AL +A +AD   K+K  G    L GIP+++KDNI+T+  + TT  S  L   + P +A VV KL + G IILGK++L E++
Sbjct:    7 TIHELRELLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQRAKEAD--EKIKN-GEDTALTGIPVIIKDNISTEG-IKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFA 127          
BLAST of EY679333 vs. ExPASy Swiss-Prot
Match: GATA_GEOMG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.338e-11
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  153 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWS 530
            + TI +L    K+ +L+S +     L  I  ++P ++  I V P+ AL+ A+ AD  R++ AAG +  L GIP+ LKD   TK  + TT  S  L   V P D   V KL++AGA+I+GK +  E++
Sbjct:    5 DLTIHELHDRLKRKELSSVEATRAMLARIEAVDPKVNAYITVTPEEALAAAEAAD--RRI-AAGDMAPLTGIPVALKDIFVTKG-IRTTCASKILDNFVPPYDGTAVAKLKEAGAVIVGKLNQDEFA 127          
The following BLAST results are available for this feature:
BLAST of EY679333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
GATA_DEHSB2.573e-1239.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DEHSC3.360e-1239.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CHRSD1.277e-1135.66Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_MORCA3.715e-1135.66Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MICAN3.715e-1136.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEHE13.715e-1138.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_METFK4.852e-1136.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_THEPX6.338e-1135.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THEP36.338e-1136.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_GEOMG6.338e-1137.01Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679333 ID=EY679333; Name=EY679333; organism=Citrus sinensis; type=EST; length=965bp
ATCCAACTCCGAGCCAAACAAAGTGACCATCGATGCATTGCCTAAAAATG
GCTACCGCAATACTGGCCTTTTCTTTGTTTTCCCATCTGCTCCTTCCGAC
TCTTCTAGCCATATCAGCTCAGAGTAATGCCATTCATGCATTCCCAATAA
GAGAAGCAACCATCAAGGATCTCCAGCTCGCTTTCAAGCAAAACAAGCTT
ACGTCCCGGCAGCTGGTTGAATTTTACCTCGGAGAAATCCACAGGCTCAA
CCCGCTGCTTCACGGCGTCATAGAGGTGAACCCCGATGCGCTATCCCAAG
CTGATAAGGCTGACTACGAGCGCAAGGTTAAGGCAGCAGGCTCTCTGCGG
GGCTTGCACGGGATTCCGATTCTTCTTAAGGATAACATTGCAACGAAGGA
CAAGATGAACACCACTGCTGGCTCGTATGCTCTGCTCGGCTCAGTCGTGC
CCCGGGATGCTGGTGTGGTGGTGAAGTTGAGGAAAGCTGGTGCCATTATT
TTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAAACTTTAGATCCTCCAAAG
CACCCAGTGGTTTCAGTGGTAGGGGGGGGGCCCAGGGAAAGAATCCATAA
TGTTCTATCAGCAAATCCTTTGTGGGTCAAGCAGTTGGCTCAGCAATTTT
CGTAACTGCAAAACTTGGGCTGCCGGGGCACTGGGGAACTGAAAAGGAAG
GGTTCCATTTCCCGGTCCGTCCCGTTCTTACTCCATAATGGGGACTCCAA
ACCCAACCCTTGGGTCTCCACCAGCAAAAACCCGGGGTTATTCCCAAAAA
CTCCCAAAAAACTGGAGCTCCGGTGGGGGCTTATTATGCAAAAAAGTAAA
ACGGATGCCTGGTTTTTTTTTTCCAAATGGGCCTTTTGACGGGGTTTTTG
TTTCTTATACAAATACCCGCGAACCCAGGGGGGCTATCACTTCTAAAATA
AAAATTTCCCCCCGG
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