EY679331

Overview
NameEY679331
Unique NameEY679331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.405e-65
Identity = 130/183 (71.04%), Postives = 144/183 (78.69%), Query Frame = 2
Query:  122 RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK 670
            R +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLM  VEG      G   +  DPL PGG F  +G    + ++FAELKVK
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEG-YRVGGGPLGEGLDPLYPGGAFDPLGLA-DDPDSFAELKVK 212          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.762e-59
Identity = 130/201 (64.68%), Postives = 145/201 (72.14%), Query Frame = 2
Query:   68 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK 670
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LM  VEG     +G   + TDPL P G+F S+G   ++ EAFAELKVK
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDR--RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEG-YRIARGPLGEVTDPLYP-GSFDSLGLA-EDTEAFAELKVK 215          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.694e-56
Identity = 127/223 (56.95%), Postives = 155/223 (69.51%), Query Frame = 2
Query:  134 RKTGSKSV---SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            +KT +K+    SSG  +YG +R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LM  +EG      G + +  DPL PG +F  +G    + + FAELKVK   N R+  +  F          +V GKG V+    +HLA
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEG-YRVNGGPAGEGLDPLYPGESFDPLGLA-DDPDTFAELKVKEIKNGRLASFSMFGFF----VQAIVTGKGPVQNL-DDHLA 235          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.873e-55
Identity = 125/212 (58.96%), Postives = 148/212 (69.81%), Query Frame = 2
Query:  158 SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            S+G  WYG DR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLM  +EG      G + +  DPL PG +F  +G    + + FAELKVK   N R+  +  F          +V GKG ++   A+HLA
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEG-YRVNGGPAGEGLDPLYPGESFDPLGLA-DDPDTFAELKVKEIKNGRLAMFSCFGFF----VQAIVTGKGPIQNL-ADHLA 238          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.342e-53
Identity = 122/204 (59.80%), Postives = 142/204 (69.61%), Query Frame = 2
Query:   71 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*Q-NCWKGRSVK*TDPL*PGGN-F*SIGFGWKNREAFAELKVK 670
            G+A + +P  +   +  GRI+M             WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LM  VEG + N   G  V   + L PGG  F  +G    +   FAELKVK
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDG--VGEGNDLYPGGQYFDPLGLA-DDPVTFAELKVK 215          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.905e-53
Identity = 120/205 (58.54%), Postives = 140/205 (68.29%), Query Frame = 2
Query:   65 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*Q-NCWKGRSVK*TDPL*PGGN-F*SIGFGWKNREAFAELKVK 670
            F+G+  N  P  + ++ G         ++   S   WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLM  VEG + N   G  V   + L PGG  F  +G    +   FAELKVK
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG--VGEGNDLYPGGQYFDPLGLA-DDPTTFAELKVK 212          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.300e-48
Identity = 117/211 (55.45%), Postives = 141/211 (66.82%), Query Frame = 2
Query:  173 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*Q-NCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK----GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            +YG DR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLM   E  + N      +   D L PGG F  +G    + + FAELKVK    G   M   L F          +V GKG V+    +HLA
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLA-DDPDTFAELKVKEIKNGRLAMFSCLGFF------VQAIVTGKGPVQNL-TDHLA 235          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.818e-42
Identity = 103/180 (57.22%), Postives = 122/180 (67.78%), Query Frame = 2
Query:  137 KTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK 670
            K  SKS SS + +YG D          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLM  VEG      G + +  DPL PG  F  +G    + + FAELKVK
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEG-YRVNGGPAGEGLDPLYPGEAFDPLGLA-DDPDTFAELKVK 221          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.277e-27
Identity = 78/139 (56.12%), Postives = 90/139 (64.75%), Query Frame = 2
Query:  374 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK--GNPRMEGWLWFSQVWLPPSGPLVPGKGTVRRTWANHLA 784
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLM  +EG      G   +  DPL PG  F  +G    + EA AELKVK   N R+  +  F          +V GKG +   + +HLA
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEG-YRVGGGPLGEGLDPLYPGDAFDPLGLA-DDPEAKAELKVKEIKNGRLAMFSMFGFF----VQAIVTGKGPIENLY-DHLA 132          
BLAST of EY679331 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.729e-22
Identity = 86/210 (40.95%), Postives = 106/210 (50.48%), Query Frame = 2
Query:  146 SKSVSSGSP----WYGLDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMEPVEG*QNCWKGRSVK*TDPL*PGGNF*SIGFGWKNREAFAELKVK----GNPRMEGWL-WFSQVWLPPSGPL 736
            SK+VS  S     WYG DR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+   E       G   +  D L PGG F  +G   K+ E  A LKVK    G   M   L +F Q ++   GP+
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEY-YRITNGLDFE--DKLHPGGPFDPLGLA-KDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPV 251          
The following BLAST results are available for this feature:
BLAST of EY679331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB215_PEA3.405e-6571.04Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_MALDO4.762e-5964.68Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE1.694e-5656.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.873e-5558.96Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU1.342e-5359.80Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC3.905e-5358.54Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNTE1.300e-4855.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.818e-4257.22Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY6.277e-2756.12Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH2.729e-2240.95Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-A06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679331 ID=EY679331; Name=EY679331; organism=Citrus sinensis; type=EST; length=963bp
CCACGCGTCCGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGG
CTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGC
AATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAA
GTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACT
TGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCT
GGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTT
TGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGG
GAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAG
TTCGGTGAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGAACCCGTTGAGGGTTAA
CAGAATTGCTGGAAGGGCCGCTCGGTAAAGTGAACTGACCCATTGTAACC
AGGTGGCAACTTTTGATCCATTGGGTTTGGGTGGAAGAACCGGGAAGCTT
TTGCTGAACTCAAGGTTAAAGGAAATCCAAGAATGGAAGGGTGGCTATGG
TTCTCCCAGGTTTGGTTACCTCCTTCCGGGCCTTTGGTACCCGGAAAGGG
AACCGTTAGAAGAACTTGGGCCAACCATTTGGCCAAAAACTGTTCAAAAA
AATATGACTGGGACAATACACCAACAAAATTTTTTCCCCGAAAAATAAGG
ACCTATTGTTGGAAAGAACTTTAATAAAGCGAGAAAAAATTGGAATAATC
AATAAAGGTATTGGGTAATAGTGGGGGATGCAACCAATATTTTTTCATTT
TATAAACAACAAC
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