EY679277

Overview
NameEY679277
Unique NameEY679277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 3.518e-72
Identity = 130/149 (87.25%), Postives = 139/149 (93.29%), Query Frame = 1
Query:    1 TGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            +GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC L INDLDA AGR+GGTTQYTVNN MV
Sbjct:  102 SGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMV 250          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 2.521e-70
Identity = 126/148 (85.14%), Postives = 136/148 (91.89%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKMC L INDLDA AGR+GGTTQYTVNN MV
Sbjct:  107 GTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMV 254          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 4.301e-70
Identity = 130/148 (87.84%), Postives = 136/148 (91.89%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDA AGR+GGTTQYTVNN MV
Sbjct:  107 GTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMV 252          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 4.301e-70
Identity = 126/148 (85.14%), Postives = 136/148 (91.89%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDA AGRMGGTTQYTVNN MV
Sbjct:   99 GTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMV 246          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 2.609e-67
Identity = 120/148 (81.08%), Postives = 133/148 (89.86%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+  AGRMGGTTQYTVNN MV
Sbjct:  101 GTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMV 248          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.891e-58
Identity = 108/148 (72.97%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            GTH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDA AGRMG TTQYTVNN MV
Sbjct:   78 GTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMV 223          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.638e-40
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 1
Query:   91 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDA AGR    TQYTVN  +V
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.057e-40
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 1
Query:   91 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDARAGRMGGTTQYTVNNHMV 447
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDA AGR    TQYTVN  +V
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.082e-20
Identity = 64/135 (47.41%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    4 GTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRM 408
            GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDA AGR+
Sbjct:   29 GTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRV 96          
BLAST of EY679277 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 38/61 (62.30%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  238 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDARAGRMGGTT 420
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDA AGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY679277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_MALDO3.518e-7287.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.521e-7085.14Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.301e-7087.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE4.301e-7085.14Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.609e-6781.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.891e-5872.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC4.638e-4065.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.057e-4065.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY4.082e-2047.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX6.979e-1262.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679277 ID=EY679277; Name=EY679277; organism=Citrus sinensis; type=EST; length=467bp
ACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGG
TCTCCGCACATACAACTTGGACAACACGATCGACGGTCTCTACATTGCCC
CTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGTCC
CTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGGCAAAGG
ACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCA
ACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAA
CCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTATCAG
GAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAAGAGCTG
GTCGTATGGGTGGCACCACCCAATACACAGTTAACAACCATATGGTTAAA
CGCCACAACTCATGAAC
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