EY679269

Overview
NameEY679269
Unique NameEY679269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679269 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.089e-11
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 3 
Query:  102 MSLIFSLFVGLLMVVL-VSSAKFDDLYQTSWVFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYVST 362
            +SL+F+L V    +   V +  FD  +  +W      V  +G+ L L+LD  SG+GF +K +YLFGK+ +Q+KLV G+SAGTVTA+Y+ +
Sbjct:    8 LSLLFTLTVSTTTLFSPVFAGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKS 97
[Close]
BLAST of EY679269 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.952e-11
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:  102 MSLIFSLFVGLLMVVLVSSAKFDDLYQTSWVFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYVST 362
            ++ +  LF+ L++   VS A F    + +W      ++ +G+ L L+LD  SG+GF SK++YLFGKVS+Q+KLV G+SAGTVT  Y+ +
Sbjct:    3 ITYLLPLFLSLIITSSVS-ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKS 90
The following BLAST results are available for this feature:
BLAST of EY679269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
XTH25_ARATH6.089e-1142.22Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH7.952e-1142.70Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-058-C11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679269 ID=EY679269; Name=EY679269; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGCTTCAACTTCCCTCCACTTCACTGGGCTTGCTCTGCTCA
TTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGCTAA
AATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTTTAATGGTGGTTTTGG
TCAGCTCAGCTAAGTTTGATGATCTTTATCAAACAAGCTGGGTTTTTGAT
CATGTTCAGTATGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTC
CGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCA
TCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTC
TATGTAAGCACACACTAACAACAATTCTGCAGATAACCAACTCAACTCAA
CCTGGTTTACTTGGTTAATCATGATGGGGGAGGGGACCTCATTCAATAAT
GTCACTTACTACTCTATTCAGTATTCTTCATCCAAAGCTTTGATAAACTT
GACATTTGCAAGCAAAAAAAAAAAAAAATCCTGGCTTTTATATGCATTCT
AAAATAACAAATGCTAGTAAGTAGTAAACCCCACCCCCTACCAACAGCTA
CGGTTGGTCTCCCTCGTGCAACTCATTAAGGCCCATAAATTTCCGGCATT
TTCTCCTCTAATCCTCCCCAACTTCCCACCCCCGTGACCCCAAAATTTTT
GGTTCCCCCCTTAACTTTTTCCCTTGTTCCATAACCTTGGGTTACCCCCC
ATTGAAAACCCAAAAATCTAATTAAAACTGGGAAAATTGTGCCCAAACCG
GGAAAGGGAGGGGGGTTTTTATTTTAAAAAACATTTTTAAACTTTGTATT
TTTTTAATTTTTTAAAACCCAAATGTTCATTAAAAGAGGGGCCCAAATAA
CAAACGCAATTTTTTATTTTTTTGATTTTTCTGGGGGGGAA
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