EY679165

Overview
NameEY679165
Unique NameEY679165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  278 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ER
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  278 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   +VKAQIWDTAG ER
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  278 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            ++VFKVVLIG+S VGK+ +L+RF RNEFS DS+ TIGVEF TRT+++   ++KAQIWDTAG ER
Sbjct:   10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLER 73          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17
Identity = 39/67 (58.21%), Postives = 55/67 (82.09%), Query Frame = 2
Query:  269 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            ++ +Y+FK+V+IGDSAVGKS +L RF RNEF+  +KATIGV+F T+++ I +K++ AQ WDTAG ER
Sbjct:    5 EEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQER 71          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:  245 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            G G GDP+++ D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K VK QIWDTAG ER
Sbjct:    5 GPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 79          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 2
Query:  278 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            DY+ K+V+IGDS VGKS +L+R+ +NEFS+   +TIGVEF T+TL I +K +K Q+WDTAG E+
Sbjct:    9 DYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEK 72          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  242 SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            +G G GD ++  D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K VK QIWDTAG ER
Sbjct:    2 AGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 77          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  242 SGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            +G G GD ++  D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  +TL IQ K VK QIWDTAG ER
Sbjct:    2 AGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 77          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  266 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT  ++ K+VK QIWDTAG ER
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69          
BLAST of EY679165 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  266 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGPER 469
            N + DY+FK++LIGDS VGKS +L RFA + ++    +TIGV+F+ RT+ +  K+VK QIWDTAG ER
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 69          
The following BLAST results are available for this feature:
BLAST of EY679165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
RAB25_RABIT7.187e-1867.19Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN7.187e-1867.19Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_BOVIN9.387e-1865.63Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RB11C_DICDI6.084e-1758.21Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB43_HUMAN3.944e-1653.33Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RB11B_DICDI1.147e-1557.81Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB43_RAT2.556e-1551.32Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE2.556e-1551.32Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
YPT1_SCHPO6.296e-1454.41GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPT1_NEUCR6.296e-1454.41GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-A07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679165 ID=EY679165; Name=EY679165; organism=Citrus sinensis; type=EST; length=541bp
AGCTCACCCGAGACATACGCTCTTTTAAAGCCATCATCCTTACAGACACC
GCAACTTTACGCCATTAGTTTATGATTTCGTTTCTGCAACTGGTGGAACC
CACCCTTTTCACTGTTACCCATCAGTCATACTTCATATTTTCATCCCACC
CAACAAATTAAACTTGTTCAAATATTGTGATTTGTGAAGTTGGTCGGTCT
TGGTAAGCTCGATCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGA
GGCTATGGAGATCCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTT
AATCGGAGACTCCGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTC
GAAACGAGTTCAGTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAA
ACTAGGACTTTAGTTATTCAACATAAAAGCGTCAAGGCACAGATCTGGGA
CACTGCTGGCCCAGAACGGTGCCTTTTTTTTTTTTCACTTCTCAATTCTT
CTTCTTTTACGTGTGTAAAAACTTCTGATCTGATTGTTTTC
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