EY744602

Overview
NameEY744602
Unique NameEY744602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 7.361e-55
Identity = 102/183 (55.74%), Postives = 133/183 (72.68%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL  EVGW Y      LE+ R+E++++ Y +KKQL +LR +AEK  +KK+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKI 189          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.640e-54
Identity = 102/183 (55.74%), Postives = 132/183 (72.13%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRL  EVGW Y      LE+ R+E++++ Y +KKQL +LR +AEK  +KK+
Sbjct:    7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKI 189          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 211.46 bits (537), Expect = 6.232e-54
Identity = 101/183 (55.19%), Postives = 132/183 (72.13%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRL  EVGW Y      LE+ R+E++++ Y +KKQ+ +LR +AEK  +KK+
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKI 189          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.180e-50
Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = 3
Query:   66 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAK 605
            VV+D + H+LGRLASIVAK+LLNGQK+V VRCE + +SG   R K+KY  +LRK     P+ G P HFRAP++IF++ VRGMIPHKT            +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRL SEVGW Y D +  LE+ R+ +    YERKK   +  ++A+K AK
Sbjct:    8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.709e-49
Identity = 95/175 (54.29%), Postives = 121/175 (69.14%), Query Frame = 3
Query:   90 MLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            +LGRLA+IVA E+L G KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++GVP PYDK KRMV+P ALK++RL+   K+ LLGRL  EVGW Y      LE+ R+E++++ Y +KK + KL   AEK  +  +
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTI 175          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.709e-49
Identity = 90/188 (47.87%), Postives = 128/188 (68.09%), Query Frame = 3
Query:   45 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKK 608
            +G+  + VV+D R H+LGRLAS+VAK LL G KV  VRCEE+ +SG   R K+K++ +LRKR N  P+ GP HFRAP++IF++ VRGMIPHKT            ++G+P+PYDK +R+V+P A++VL L+   KYC +GRL  EVGW+Y D I+ LE+ R+ + +V  +  ++L KL  KA +   K
Sbjct:    2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAK 189          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.883e-49
Identity = 96/189 (50.79%), Postives = 124/189 (65.61%), Query Frame = 3
Query:   45 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERS--QVAYERKKQLHKLRAKAEKGAK 605
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE+I +SG   R K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL  EVGW Y D +R+LE  R+ +S   +AYE+K +    R   E G K
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLK----RITKESGEK 186          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.756e-48
Identity = 91/174 (52.30%), Postives = 120/174 (68.97%), Query Frame = 3
Query:   45 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERS--QVAYERK 560
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE++ +SG   R K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL  EVGW Y + +R+LE  R+ ++  +VAYERK
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERK 175          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.912e-48
Identity = 97/187 (51.87%), Postives = 124/187 (66.31%), Query Frame = 3
Query:   60 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERK--KQLHKLRAKAEKGAKKKL 614
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL SEVGW Y D + +LE+ R+ +S   Y+ K  KQ     AKA      KL
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNGKL 192          
BLAST of EY744602 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.912e-48
Identity = 92/189 (48.68%), Postives = 124/189 (65.61%), Query Frame = 3
Query:   48 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLESEVGWNYYDTIRELEKSRQERSQVAYERKKQLHKLRAKAEKGAKKKL 614
            G+  + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG   R K+KYM FLRKR N  P+ G  H+RAP KIFWRTVRGM+PHKT            YEGVPA Y K K +  P A +  RLQ   K+C++GRL  EVGW + D + +LE  R+ +    +E+KK++ KL  +A+K A  K+
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKI 189          
The following BLAST results are available for this feature:
BLAST of EY744602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RL13A_BOVIN7.361e-5555.7460S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_RAT1.640e-5455.7460S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE6.232e-5455.1960S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
RL16_NEUCR4.180e-5053.5960S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_SALTR2.709e-4954.2960S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL13A_DROME2.709e-4947.8760S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_SPOFR7.883e-4950.7960S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL13A_CHOPR1.756e-4852.3060S ribosomal protein L13a OS=Choristoneura parall... [more]
RL16A_SCHPO3.912e-4851.8760S ribosomal protein L16-A OS=Schizosaccharomyces... [more]
RL13A_CAEEL3.912e-4848.6860S ribosomal protein L13a OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-002-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744602 ID=EY744602; Name=EY744602; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGA
ATCTGCGCGAAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCG
GCTGGCGTCGATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCG
CGGTCCGCTGCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAA
ATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCA
CGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCC
GCGGGATGATACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGA
TTGAAGGCATATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAAT
GGTTATCCCCGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGT
ACTGCTTGTTAGGTCGCCTGGAATCTGAGGTTGGATGGAATTATTATGAC
ACCATCAGGGAGCTTGAGAAGAGTAGACAGGAGAGGTCACAGGTGGCTTA
TGAGAGGAAGAAGCAGCTCCACAAACTTAGGGCTAAGGCTGAAAAGGGTG
CAAAAAAAAAACTGGTCTCGCAATTGTACATCCCTGGCTCCCGGCCAAAT
ATTGATCAATTTGCCTCGTGAAAAAAATTTTTGGTTGGGGATTGTCTTGA
ATTTTCCTTGGGGTTTTCCAACTTGGTTCAAGAAATTTTTAGAAGCAAAA
AATTTGGAGACAACTTGGAATGGAATAGCTTTTTTTTTTCGCCCACTTAA
ATGCGGTGGGTTCGTAAAAGGATTTTCCCTTTTAGTTCCAAAAAAAGATC
GGGGGGGGGGGGTTGTTTTTGCGCTAGGGGCCACGATTAATACGACAGAC
GGGAAACACAGAGGTCGCGCGCAACGGAGGAGCAGCGAACGACGCAACCA
GCTCGAACCGGCTGCCGAACGGACACCCGCTGA
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